Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4823
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                27   0.12 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   4.4  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   7.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.8  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
 Frame = -1

Query: 574 SPSILATKY---DPQI--ENYRQYASPRTPLRAIFQFSMTMK 464
           SP  LA K+    PQI   + R Y SPRTP++ +++ ++  K
Sbjct: 3   SPQKLANKFYRISPQILKNDKRIYLSPRTPIKNVYKNNIETK 44


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 313 SLTVISGNASKGGR 354
           +L VISG   KGGR
Sbjct: 90  TLNVISGKTGKGGR 103


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 387 HGVFGVHGLS 416
           HG+ G+HGLS
Sbjct: 138 HGLHGLHGLS 147


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 131 HNPGKPKNEPISYRPIILLPAIGKLYQRLIRK 36
           HN   P N  + YR  + L     +   L+RK
Sbjct: 307 HNSTNPPNILLYYRDSLALSVFALILTALLRK 338


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -3

Query: 611 IQGKAI*KDSCPLTKHTG 558
           ++ + + +D CP T+H G
Sbjct: 188 VRTEEVPEDKCPFTEHLG 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,339
Number of Sequences: 438
Number of extensions: 3918
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)