Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4821
         (310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    25   1.9  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   1.9  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    25   3.4  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    24   5.9  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    24   5.9  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    24   5.9  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    23   7.9  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    23   7.9  

>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -2

Query: 201 MFTIDFHSEEITRVIK 154
           +FT+D +S+E+ RVIK
Sbjct: 553 IFTVDIYSDELERVIK 568


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 17  YSARGALQIETHYCFMAEIGGWWY 88
           +  RGA+ I +    + E+ GWWY
Sbjct: 645 FGRRGAICIGSRVGGLGEMPGWWY 668


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 98  WTRNLTTSNCTSYNYAG 148
           WT +L +SN TSY ++G
Sbjct: 123 WTPSLLSSNATSYLHSG 139


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 17   YSARGALQIETHYCFMAEIGGWWY 88
            +  +GAL I      + ++ GWWY
Sbjct: 1531 FGRKGALGIGARVGGLGQMPGWWY 1554


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 17   YSARGALQIETHYCFMAEIGGWWY 88
            +  +GAL I      + ++ GWWY
Sbjct: 1535 FGRKGALGIGARVGGLGQMPGWWY 1558


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 142 CGFNFYYTSYFFTVKVNRKHLL 207
           CG   Y TSYFF++K N   LL
Sbjct: 126 CGL--YVTSYFFSIKNNPFALL 145


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 139 LCGFNFYYTSYFFTVKVNRKHLLSTYF 219
           LC F  Y T+Y F V + ++ L + +F
Sbjct: 59  LCFFLVYRTTYSFGVCLMKRFLFNKFF 85


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 280 YYYKRLSGIRIPACRYQFYQRNTYLTNV 197
           Y  KR+   RIP+ ++      TY++N+
Sbjct: 494 YNRKRIVSDRIPSLKFAIRAAETYISNL 521


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,302,370
Number of Sequences: 5004
Number of extensions: 23380
Number of successful extensions: 52
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)