Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4821
         (310 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0254 - 26706830-26706943,26707063-26707193,26707330-267074...    27   3.0  
03_02_0928 + 12464325-12464498,12466494-12466679,12466929-124670...    25   9.2  

>05_06_0254 -
           26706830-26706943,26707063-26707193,26707330-26707417,
           26707970-26708087,26708184-26708332,26708787-26708840,
           26708963-26709031,26709146-26709246,26709391-26709473,
           26709846-26710041,26710171-26710279
          Length = 403

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 98  WTRNLTTSNCTSYNYAGLIFITRVISSL*KSIVNIC*VRISLVKLVPAS 244
           WT N+TT    +   AG  F+  VI      I  +C  R    +L+P +
Sbjct: 229 WTHNMTTKELDTIRSAG--FLVSVIHGRSDIIAQLCHARRLAERLIPVA 275


>03_02_0928 + 12464325-12464498,12466494-12466679,12466929-12467021,
            12467212-12467394,12467506-12467608,12467695-12467865,
            12468086-12469084,12469178-12469254,12469485-12470337,
            12470878-12471000,12471526-12471878
          Length = 1104

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 208  STYFFGKIGTCKRGFEYP 261
            ST FFG IG+C++    P
Sbjct: 1081 STSFFGPIGSCRKAMPVP 1098


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,381,718
Number of Sequences: 37544
Number of extensions: 141994
Number of successful extensions: 271
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)