Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4821
         (310 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82085-7|CAB04988.1|  185|Caenorhabditis elegans Hypothetical pr...    27   2.0  
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical...    27   2.0  
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    27   2.0  
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    27   3.5  

>Z82085-7|CAB04988.1|  185|Caenorhabditis elegans Hypothetical
           protein ZK218.8 protein.
          Length = 185

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -2

Query: 303 FVCSDNSIIIISDYRVFESPLAGTNFTKEIRT*QMFTIDFHSEEITRVIKIK 148
           FV +   ++++   ++ +  L   NF K +      TI++ + E    IKIK
Sbjct: 20  FVSATGCVLVVDTIKIHDILLKTVNFEKGLHYVNAGTIEYMASEYNYTIKIK 71


>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3b protein.
          Length = 1398

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 89  LPVWTRNLTTSNCTSYNYAG 148
           LP W  N  T  C  +NYAG
Sbjct: 595 LPRWYYNAQTMQCVQFNYAG 614


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
            protein Y43F8B.3a protein.
          Length = 1816

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 89   LPVWTRNLTTSNCTSYNYAG 148
            LP W  N  T  C  +NYAG
Sbjct: 1013 LPRWYYNAQTMQCVQFNYAG 1032


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
            protein W09B6.1a protein.
          Length = 2054

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 25   TRRPSNRNALLLYG*NRRVVVPTRVDSKSYNQ 120
            T  P + N ++L G N+ +VV   +DSK++NQ
Sbjct: 1021 TATPKSFNKVVLKG-NKLIVVRLSLDSKTFNQ 1051


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,225,891
Number of Sequences: 27780
Number of extensions: 129388
Number of successful extensions: 247
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)