Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4821
         (310 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   3.4  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   4.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   5.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   5.9  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    20   7.8  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 113 TTSNCTSYNYAGLIFITRVISS 178
           +TS  T  NY+ +IF++ V  S
Sbjct: 563 STSGATIVNYSIMIFLSAVFIS 584


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 149 NPHNYNLYNY 120
           N +NYN YNY
Sbjct: 97  NNNNYNNYNY 106


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 50  AFRFEGRLVPNTCSP 6
           AF FEG   PN+  P
Sbjct: 286 AFHFEGEKGPNSQGP 300


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 13  QVFGTRRPSNRNA 51
           +V  TRRPS RN+
Sbjct: 397 RVGSTRRPSRRNS 409


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 169 YFFTVKVNRKHLL 207
           YF   +++R+HLL
Sbjct: 26  YFIYFRISRRHLL 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,808
Number of Sequences: 438
Number of extensions: 1948
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)