Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4813
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.8  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    27   3.1  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = +1

Query: 427 ASPHLTESPRPTPLMALTAS---PPTXSASTLGKPITTASPLFSNIS 558
           +S     +P PT   + T S   PPT  +S+L  PIT   P  S  S
Sbjct: 156 SSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSS 202



 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +1

Query: 442 TESPRPTPLMALTAS---PPTXSASTLGKPITTASPLFSNIS 558
           + SP P+   + T S   PPT  +S+L  PIT   P  S  S
Sbjct: 104 SSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSS 145


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 454 RPTPLMALTASPPTXSASTLGKPITTASPLFSNISYAKIAC 576
           + T +  +++SPP   A    KPI+  S L +  S A+  C
Sbjct: 745 KQTEIPPVSSSPPHNDAPPKAKPISAPSELPNTTSVAEAKC 785


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,516,766
Number of Sequences: 5004
Number of extensions: 20498
Number of successful extensions: 81
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)