Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4811
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    30   0.33 
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    30   0.44 
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   7.1  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   9.4  

>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 382 KYKNKEDSQAVINNIVNDYNKEQSVSFSG 468
           KYK   + QA I N+VN +NK +  +F G
Sbjct: 548 KYKEVHEKQAAIANMVNTFNKPKRNAFIG 576


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 601 TEQLSDSPVEIPASVGSFGTQTVAVNQPSGSDSFSAHPS 717
           TE +SDS  ++P++  + GT+ ++ N+     SFS  P+
Sbjct: 83  TEYISDSTTDLPSAAMARGTRQLSYNENLDQRSFSKTPN 121


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 23  FLPIIIINTKQVLPANIKNTTYNNNQLKSTSTSMYTLLLKN 145
           F P + ++ + +L    KN  YN    K    S YT  L+N
Sbjct: 503 FTPFVNLDDELLLIEKEKNEKYNFTSRKRLGLSPYTFTLEN 543


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -3

Query: 114 LVDLSWLLLYVVFLIFAGSTCFVLII 37
           LV + + LLYV+F+ F+GS+   ++I
Sbjct: 243 LVMILYYLLYVLFVFFSGSSGVSVVI 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,694
Number of Sequences: 5004
Number of extensions: 58989
Number of successful extensions: 183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)