Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4811
(791 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0180 + 15367737-15367755,15368874-15369739 30 1.8
05_03_0033 - 7585267-7586028 30 1.8
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510... 30 2.4
05_03_0040 - 7646525-7647775 29 4.2
05_03_0035 - 7592177-7592938 29 4.2
03_06_0716 - 35695158-35696795,35697075-35697288,35697290-356973... 29 4.2
08_02_0937 + 22801526-22802461 29 5.6
03_05_0815 + 27917516-27917767,27918024-27918110,27918281-279183... 28 7.4
11_06_0610 - 25449085-25453284 28 9.8
10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306 28 9.8
>09_04_0180 + 15367737-15367755,15368874-15369739
Length = 294
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 572 DDTPKTPREPDPKLEPESSMV*APDPK 492
D PK EPDP+LEPE P+P+
Sbjct: 150 DPEPKPDPEPDPELEPEPEPEPDPEPE 176
>05_03_0033 - 7585267-7586028
Length = 253
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 563 PKTPREPDPKLEPESSMV*APDPKTFCGESSSPEKDT 453
PK +P+PK EP+S P P+ S PE ++
Sbjct: 185 PKAESQPEPKTEPKSESKAEPKPERKSYSKSKPEPES 221
>07_03_1757 +
29250163-29250349,29250612-29250813,29250898-29251008,
29251112-29251160,29251247-29251353,29251439-29251942,
29252486-29252614,29252865-29253161,29253274-29253720,
29253828-29253893,29254109-29254169,29254314-29254463,
29254555-29254689,29254791-29254818,29255430-29255479
Length = 840
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +3
Query: 141 RTRNTKT---TPSYCTPACPKTL*NHFCKNTFSNPYSPNYSRTP 263
RTR T+T +P C P+ L ++ +SNP SP RTP
Sbjct: 448 RTRRTRTWVISPD-CKDVSPRVLFERSSEDAYSNPGSPMMCRTP 490
>05_03_0040 - 7646525-7647775
Length = 416
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 563 PKTPREPDPKLEPESSMV*APDPKTFCGESSSPE 462
PK +P+PK EPE V P+PK PE
Sbjct: 66 PKPTPKPEPKPEPEPKPVPEPEPKPEPKPEPKPE 99
>05_03_0035 - 7592177-7592938
Length = 253
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 563 PKTPREPDPKLEPESSMV*APDPKTFCGESSSPEKDT 453
P+ +P+PK EP+S P P+ S PE ++
Sbjct: 185 PRAESQPEPKTEPKSESKAEPKPERKSYSKSKPEPES 221
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = -1
Query: 593 PSGIGEGDDTPKTPREP--DPKLEPESSMV*APDPKTFCGESSSPE 462
P E PK EP +PK EP+S P+P+T S P+
Sbjct: 127 PEAKSEPKSEPKPKSEPYAEPKSEPKSEPQSEPNPETKAEPKSEPK 172
>03_06_0716 -
35695158-35696795,35697075-35697288,35697290-35697372,
35697695-35697865
Length = 701
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 464 PGLTIHHKTSLGLELRPYLTLVLTSDPV 547
P L +H + ++ LE Y+TL +SDP+
Sbjct: 564 PTLIVHERVTIRLESESYVTLQWSSDPI 591
>08_02_0937 + 22801526-22802461
Length = 311
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -1
Query: 596 CPSGIGE--GDDTPKTPREPDPKLEPESSMV*APDPKTFCGESSSPEKD 456
CP GE ++ P P EP+ + E S P P F +SSS +++
Sbjct: 45 CPRCRGEFLEEENPNPPPEPEEEEEVSSPPPPPPPPPGFLSDSSSDDEE 93
>03_05_0815 +
27917516-27917767,27918024-27918110,27918281-27918394,
27919644-27919835,27919925-27921677,27921771-27922708,
27923587-27923859
Length = 1202
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3
Query: 141 FRSSVYIEVLVDLSWLLLYVVFLIFAGSTCF 49
++ S+Y+E+L L++LLL +IFA F
Sbjct: 321 YKISLYVEILAILAFLLLLFTNIIFAAEILF 351
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = -1
Query: 647 PTEAGISTGESDSCSV*CPSGIGEGDDTPKT--PREPDPKLEPESSMV*APDPKTFCGES 474
PTE T ES+S S P+ G PK+ P E P PES +P P G +
Sbjct: 679 PTEKSPPTPESESSSPPPPAPEGHMPSPPKSTPPVEKSPP-TPESEAS-SPPPPAPEGHT 736
Query: 473 SSPEKDT 453
SP K +
Sbjct: 737 PSPPKSS 743
>10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306
Length = 387
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 83 TYNNNQLKSTSTSMYTLLLKNPKYQDHALLLYSRLPKNTIKSF 211
T N N ++ ++LKNP+ Q AL+L + KN K+F
Sbjct: 77 TGNVNSIELIRAIKRRIMLKNPRVQYLALVLLETVVKNCEKAF 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,360,004
Number of Sequences: 37544
Number of extensions: 354266
Number of successful extensions: 1258
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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