Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4810
(448 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 29 0.33
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 1.7
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 27 1.7
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem... 27 1.7
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 25 5.3
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 5.3
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p... 25 5.3
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.0
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 7.0
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc... 25 7.0
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 29.1 bits (62), Expect = 0.33
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 289 FLNRPLLRSGRSYQVFFGGPPVSPFLVDSVLSFYSKKKN 405
F+++PL RSG Y+VF G + + SVL + + + N
Sbjct: 701 FISKPLKRSGSIYEVFSDG--IGRVIYGSVLDYEATRNN 737
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 1.7
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 86 SPWATVTTLHTPSGWPYARLPTRAIKKNSTT*ANYN 193
+P A V T+ P P ++PT A+K STT ++N
Sbjct: 1301 TPPAVVPTVQHPQ--PTKQIPTAAVKDPSTTSTSFN 1334
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 26.6 bits (56), Expect = 1.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 418 GPPSSFFF*NRMITRSQPGRVIPVGLRRRLGSSYRIAI 305
GP + FF + R PGR+I + R +YR+A+
Sbjct: 330 GPHAGFFACSEEFKRKIPGRLIGLSKDRLENPAYRLAL 367
>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
membrane translocase Oxa101|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 1.7
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +2
Query: 95 ATVTTLHTPSGWPYARLPTRAIKKNSTT*ANYN*SLNVKAIKTFIIEILITP*AIASAR 271
+T T+ PS WPYA + A N A + S+ + T + + +TP IAS R
Sbjct: 55 STATSGFNPSWWPYALIQNTAYTINVYAGAPWWVSI---ILTTLGVRLALTPVMIASFR 110
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 5.3
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 347 GPPKKTW*LLPDRNSGLLRKSDPNHS 270
GP + W +LP++N + DP+H+
Sbjct: 138 GPIESAW-ILPEKNCAFISFLDPSHA 162
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 5.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 337 FGGPPVSPFLVDSVLSFYSKKKNSRGGPVPNSPYSES 447
FGGP ++ + + SFYS N V P+S S
Sbjct: 655 FGGPTLNILIGIGISSFYSSISNHGNDSVIEIPHSLS 691
>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 25.0 bits (52), Expect = 5.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 107 WLPSPMDFSNATAYRYIML 51
W P P+D SNA YI L
Sbjct: 84 WAPGPLDGSNAAWREYITL 102
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 24.6 bits (51), Expect = 7.0
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = +1
Query: 319 RSYQVFFGGPPV--SPFLVDSVLS 384
+++Q F+GGPP+ SP L + L+
Sbjct: 657 QTFQAFYGGPPIILSPNLYEKKLN 680
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 7.0
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = +1
Query: 106 HSTHTIRLA---VCSSAYKGNKKKFNY 177
HS+H+ A VC +Y+GN+KK Y
Sbjct: 42 HSSHSASEADEYVCKLSYEGNRKKRIY 68
>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 24.6 bits (51), Expect = 7.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 135 YGQPDGVCRVVTVAH 91
YG P GVC V +AH
Sbjct: 316 YGIPHGVCNAVLLAH 330
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,907,872
Number of Sequences: 5004
Number of extensions: 38549
Number of successful extensions: 103
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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