Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4809
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   4.1  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    27   4.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   4.1  
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    26   5.4  

>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 624 LTNNFVIFIYYYSEFSKCES 565
           +TNN+   IYY ++FS CE+
Sbjct: 848 ITNNYRPRIYYLAQFSVCEN 867


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 254 HSSPHKAVTSSKSRHHASNKP 192
           H+S HK   ++K R H+  KP
Sbjct: 19  HNSSHKVTENAKKRKHSKEKP 39


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = -3

Query: 203  SNKPYTWLQTVSARSELDNVRMHHIMNVTRKARVPEHSKPAHMSA 69
            ++K +   + +S  +++DN  M   ++  R  ++  H KP + SA
Sbjct: 1391 NHKEHVLERAMSENNKMDNEAMDGFLDKLRNVKLESHHKPRNRSA 1435


>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 117 RYVHNMVHAYIVELGTCRHCLKP 185
           + + N++  YIVE  TC+ C  P
Sbjct: 257 KQIENVLRRYIVEYVTCKTCKSP 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,418
Number of Sequences: 5004
Number of extensions: 49291
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)