Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4808
(474 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 109 2e-25
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 30 0.16
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 27 1.5
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 27 1.9
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 26 2.5
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 25 4.5
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 5.9
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 25 7.8
SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc... 25 7.8
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 109 bits (262), Expect = 2e-25
Identities = 42/106 (39%), Positives = 76/106 (71%)
Frame = +1
Query: 157 EEPAISMDVNGGKIICAKHSELQQVNLKALPEGTEIKDGERVPVVAKDMGSCEIYPQTIA 336
+EP+++MD + GK++ + ++E+ ++ E +++ DG + + K++G+ E+YP +
Sbjct: 301 DEPSVTMD-SSGKVVWSNYNEVMSAMIRPAKEQSDLTDGSLISLSVKELGTTELYPAVLK 359
Query: 337 HNPNGRFMVVCGDGEFIIYTAMALRNKAFGTAQEFVWAFDSSQYAT 474
H+PNGRF+ VCG+GE+I+YTA+A RNKA+G A +F W+ DS+ Y +
Sbjct: 360 HSPNGRFVSVCGNGEYIVYTALAWRNKAYGKALDFAWSADSNVYGS 405
Score = 41.1 bits (92), Expect = 8e-05
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 15 IWHAGTYRLKSSLNYGFERVWTISTMHGSNNVAVGYDEGTIMIKVG 152
IWH +Y L S N+ +R W I+ + V VG+D G I +G
Sbjct: 254 IWHTLSYSLIKSYNFSLDRAWCIAQNKDNGLVTVGFDNGLITFSLG 299
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 30.3 bits (65), Expect = 0.16
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 232 NLKALPEGTEIKDGERVPVVAKDMGSCEIYPQTIAHNP 345
N + PE ++K G +P A SCE TIA+ P
Sbjct: 300 NPQLTPEMFDVKQGSPIPPTAYSGSSCETSQHTIANTP 337
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 27.1 bits (57), Expect = 1.5
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -1
Query: 384 ELTITAHHHESTVRIVGYRLWVYLAGAHVFSNDWYTLSV 268
E+ I + H S R + + + GAHV +ND + + +
Sbjct: 100 EILIYSEHLGSLTRTYSFGILQKIIGAHVLANDGFAIDI 138
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 26.6 bits (56), Expect = 1.9
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +1
Query: 199 ICAKHSELQQVNLKALPEGTEIK 267
+CAK+ L+++NL+ LP GTE++
Sbjct: 89 LCAKN--LKKINLRQLPVGTELQ 109
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 26.2 bits (55), Expect = 2.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 358 MVVCGDGEFIIYTAMALRNKAFGTAQE 438
+ +C +GEF+I MALR + Q+
Sbjct: 720 LTMCAEGEFLISLVMALRLNEYKVVQK 746
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 4.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 15 IWHAGTYRLKSSLNYGFERVWTISTMHGSNNVAVGYDEGTIMI 143
IW A T+RL+ +L + + + GS +A D+ TI I
Sbjct: 80 IWSALTFRLECTLFGHYRGISQVKWATGSKYLASASDDKTIRI 122
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.0 bits (52), Expect = 5.9
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -1
Query: 399 RGVYDELTITAHHHESTVRIVGY--RLWVYLAGAHVFSNDWYTLSVLYFCAFRESLQVDL 226
+G ++EL T +E +R Y R+WV + + ND++ + +L+ + L VDL
Sbjct: 84 KGKHEELRET---YEQMLRPFPYVPRVWVDYISSELAFNDFHAVELLFSRCLVKVLSVDL 140
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 24.6 bits (51), Expect = 7.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 72 VWTISTMHGSNNVAVGYDEGTI 137
+W +S + G + + GYD G I
Sbjct: 81 IWVLSAVAGISGLLFGYDTGVI 102
>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 266
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 446 HTNSWAVPNALFLRAIAVYMMNSPS-PHT 363
H SW + N+L R I++ + +SPS PH+
Sbjct: 64 HVYSWTLQNSLLTR-ISIPLESSPSEPHS 91
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,797
Number of Sequences: 5004
Number of extensions: 48259
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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