Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4808
(474 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X70476-1|CAA49900.1| 906|Homo sapiens subunit of coatomer compl... 176 4e-44
BC000326-1|AAH00326.1| 906|Homo sapiens coatomer protein comple... 176 4e-44
BC117259-1|AAI17260.1| 1581|Homo sapiens LOC200383 protein protein. 34 0.29
AK027182-1|BAB15685.1| 366|Homo sapiens protein ( Homo sapiens ... 34 0.29
AB051484-1|BAB21788.2| 2182|Homo sapiens KIAA1697 protein protein. 34 0.29
AK130627-1|BAC85398.1| 374|Homo sapiens protein ( Homo sapiens ... 30 4.7
AK128060-1|BAC87254.1| 1243|Homo sapiens protein ( Homo sapiens ... 30 4.7
AB107036-1|BAC92750.1| 5061|Homo sapiens epiplakin protein. 29 6.2
AB051895-1|BAB40803.1| 5065|Homo sapiens epiplakin 1 protein. 29 6.2
BC080607-1|AAH80607.1| 350|Homo sapiens TMEM185B protein protein. 29 8.2
AK024632-1|BAB14938.1| 267|Homo sapiens protein ( Homo sapiens ... 29 8.2
AC012363-2|AAY14799.1| 350|Homo sapiens unknown protein. 29 8.2
>X70476-1|CAA49900.1| 906|Homo sapiens subunit of coatomer complex
protein.
Length = 906
Score = 176 bits (428), Expect = 4e-44
Identities = 82/105 (78%), Positives = 93/105 (88%)
Frame = +1
Query: 157 EEPAISMDVNGGKIICAKHSELQQVNLKALPEGTEIKDGERVPVVAKDMGSCEIYPQTIA 336
EEPA+SMD NG KII AKHSE+QQ NLKA+ + EIKDGER+P+ KDMGSCEIYPQTI
Sbjct: 302 EEPAMSMDANG-KIIWAKHSEVQQANLKAMGDA-EIKDGERLPLAVKDMGSCEIYPQTIQ 359
Query: 337 HNPNGRFMVVCGDGEFIIYTAMALRNKAFGTAQEFVWAFDSSQYA 471
HNPNGRF+VVCGDGE+IIYTAMALRNK+FG+AQEF WA DSS+YA
Sbjct: 360 HNPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFAWAHDSSEYA 404
Score = 79.4 bits (187), Expect = 6e-15
Identities = 30/46 (65%), Positives = 42/46 (91%)
Frame = +3
Query: 15 IWHAGTYRLKSSLNYGFERVWTISTMHGSNNVAVGYDEGTIMIKVG 152
IWH+ TYRL+S+LNYG ERVW ++++ GSNNVA+GYDEG+I++K+G
Sbjct: 255 IWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGYDEGSIIVKLG 300
>BC000326-1|AAH00326.1| 906|Homo sapiens coatomer protein complex,
subunit beta 2 (beta prime) protein.
Length = 906
Score = 176 bits (428), Expect = 4e-44
Identities = 82/105 (78%), Positives = 93/105 (88%)
Frame = +1
Query: 157 EEPAISMDVNGGKIICAKHSELQQVNLKALPEGTEIKDGERVPVVAKDMGSCEIYPQTIA 336
EEPA+SMD NG KII AKHSE+QQ NLKA+ + EIKDGER+P+ KDMGSCEIYPQTI
Sbjct: 302 EEPAMSMDANG-KIIWAKHSEVQQANLKAMGDA-EIKDGERLPLAVKDMGSCEIYPQTIQ 359
Query: 337 HNPNGRFMVVCGDGEFIIYTAMALRNKAFGTAQEFVWAFDSSQYA 471
HNPNGRF+VVCGDGE+IIYTAMALRNK+FG+AQEF WA DSS+YA
Sbjct: 360 HNPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFAWAHDSSEYA 404
Score = 79.4 bits (187), Expect = 6e-15
Identities = 30/46 (65%), Positives = 42/46 (91%)
Frame = +3
Query: 15 IWHAGTYRLKSSLNYGFERVWTISTMHGSNNVAVGYDEGTIMIKVG 152
IWH+ TYRL+S+LNYG ERVW ++++ GSNNVA+GYDEG+I++K+G
Sbjct: 255 IWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGYDEGSIIVKLG 300
>BC117259-1|AAI17260.1| 1581|Homo sapiens LOC200383 protein protein.
Length = 1581
Score = 33.9 bits (74), Expect = 0.29
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +2
Query: 272 ESVYQSLLKTWAPARYTHKR*PTIRTVDSWWCAVMVSSSYTPRWL*GTRRSGRPRSLY 445
E VY S L PA +++ P+++ + SW +++ +S+ WL + G+P+S +
Sbjct: 1357 EKVYNSFLNNQVPALWSNTAYPSLKPLGSWVKDLILRTSFVDLWL----KRGQPKSYW 1410
>AK027182-1|BAB15685.1| 366|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23529 fis, clone LNG06042. ).
Length = 366
Score = 33.9 bits (74), Expect = 0.29
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +2
Query: 272 ESVYQSLLKTWAPARYTHKR*PTIRTVDSWWCAVMVSSSYTPRWL*GTRRSGRPRSLY 445
E VY S L PA +++ P+++ + SW +++ +S+ WL + G+P+S +
Sbjct: 142 EKVYNSFLNNQVPALWSNTAYPSLKPLGSWVRDLILRTSFVDLWL----KRGQPKSYW 195
>AB051484-1|BAB21788.2| 2182|Homo sapiens KIAA1697 protein protein.
Length = 2182
Score = 33.9 bits (74), Expect = 0.29
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +2
Query: 272 ESVYQSLLKTWAPARYTHKR*PTIRTVDSWWCAVMVSSSYTPRWL*GTRRSGRPRSLY 445
E VY S L PA +++ P+++ + SW +++ +S+ WL + G+P+S +
Sbjct: 1958 EKVYNSFLNNQVPALWSNTAYPSLKPLGSWVKDLILRTSFVDLWL----KRGQPKSYW 2011
>AK130627-1|BAC85398.1| 374|Homo sapiens protein ( Homo sapiens
cDNA FLJ27117 fis, clone SPL06311. ).
Length = 374
Score = 29.9 bits (64), Expect = 4.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 317 ISQEPMSLATTGTRSPSFISVPSGRAFKLTCCNSECL 207
+S+E S T +R P FIS+ + + FK T +CL
Sbjct: 80 MSKEKSSDTTKESRPPDFISISASKKFKKTKPKEDCL 116
>AK128060-1|BAC87254.1| 1243|Homo sapiens protein ( Homo sapiens
cDNA FLJ46180 fis, clone TESTI4004031. ).
Length = 1243
Score = 29.9 bits (64), Expect = 4.7
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 285 WYTLSVLYFCAFRESLQVDLLQFRVLSTDNLSSVHV-HRYSRLFYCPLLSLSYLRH 121
W L +LY + V QF L++DNL+++ + + C L+SLS R+
Sbjct: 219 WLVLEILYMLGEKLKQVVYGHQFMNLASDNLTNISLFEEHCETLLCDLISLSLNRY 274
>AB107036-1|BAC92750.1| 5061|Homo sapiens epiplakin protein.
Length = 5061
Score = 29.5 bits (63), Expect = 6.2
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -2
Query: 341 LWAIVCGYISQEPMSLATTGTRSPSFISVPSGRAFKLTCCNSECLAQIIFPP 186
+W + G I+QE + GT+SP+ V A K + C+A ++ P
Sbjct: 1181 VWLLDAGIITQETLEALAQGTQSPA--QVAEQPAVKACLWGTGCVAGVLLQP 1230
>AB051895-1|BAB40803.1| 5065|Homo sapiens epiplakin 1 protein.
Length = 5065
Score = 29.5 bits (63), Expect = 6.2
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -2
Query: 341 LWAIVCGYISQEPMSLATTGTRSPSFISVPSGRAFKLTCCNSECLAQIIFPP 186
+W + G I+QE + GT+SP+ V A K + C+A ++ P
Sbjct: 1181 VWLLDAGIITQETLEALAQGTQSPA--QVAEQPAVKACLWGTGCVAGVLLQP 1230
>BC080607-1|AAH80607.1| 350|Homo sapiens TMEM185B protein protein.
Length = 350
Score = 29.1 bits (62), Expect = 8.2
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = -1
Query: 243 SLQVDLLQFRVLSTDNLSSVHVHRYSRLFYCPLLSLSYLRHTLQRRCSNRAWW 85
++ V LL F VL L + Y +F LSL L T RR WW
Sbjct: 219 TIVVPLLTFEVLLVHRLDGHNTFSYVSIFVPLWLSLLTLMATTFRRKGGNHWW 271
>AK024632-1|BAB14938.1| 267|Homo sapiens protein ( Homo sapiens
cDNA: FLJ20979 fis, clone ADSU01938. ).
Length = 267
Score = 29.1 bits (62), Expect = 8.2
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = -1
Query: 243 SLQVDLLQFRVLSTDNLSSVHVHRYSRLFYCPLLSLSYLRHTLQRRCSNRAWW 85
++ V LL F VL L + Y +F LSL L T RR WW
Sbjct: 136 TIVVPLLTFEVLLVHRLDGHNTFSYVSIFVPLWLSLLTLMATTFRRKGGNHWW 188
>AC012363-2|AAY14799.1| 350|Homo sapiens unknown protein.
Length = 350
Score = 29.1 bits (62), Expect = 8.2
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = -1
Query: 243 SLQVDLLQFRVLSTDNLSSVHVHRYSRLFYCPLLSLSYLRHTLQRRCSNRAWW 85
++ V LL F VL L + Y +F LSL L T RR WW
Sbjct: 219 TIVVPLLTFEVLLVHRLDGHNTFSYVSIFVPLWLSLLTLMATTFRRKGGNHWW 271
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,115,483
Number of Sequences: 237096
Number of extensions: 1953299
Number of successful extensions: 5603
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5599
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4156838854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -