Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4808
         (474 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical pr...   146   5e-36
Z81492-5|CAB04024.1|  368|Caenorhabditis elegans Hypothetical pr...   103   7e-23
AL032627-14|CAA21549.1|  386|Caenorhabditis elegans Hypothetical...    37   0.009
AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical...    29   1.3  
U42847-4|AAF23186.1| 1073|Caenorhabditis elegans Immunoglobulin-...    28   3.9  
AF099913-5|AAC68752.1|  305|Caenorhabditis elegans Hypothetical ...    27   5.2  
U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon gu...    27   6.9  
U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon gu...    27   6.9  
AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.      27   6.9  
U64840-4|AAB04962.1|  316|Caenorhabditis elegans Serpentine rece...    27   9.1  
AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical
           protein F38E11.5 protein.
          Length = 1000

 Score =  146 bits (355), Expect = 5e-36
 Identities = 68/107 (63%), Positives = 84/107 (78%), Gaps = 2/107 (1%)
 Frame = +1

Query: 157 EEPAISMDVNGGKIICAKHSELQQVNLKALP--EGTEIKDGERVPVVAKDMGSCEIYPQT 330
           EEPA+SMD + GKI+ AKHSE+QQ NLK +   E   I+DGER+P+  KD+GS EIYPQT
Sbjct: 302 EEPAVSMD-SSGKILWAKHSEIQQANLKTISTEESEAIQDGERLPLSVKDLGSSEIYPQT 360

Query: 331 IAHNPNGRFMVVCGDGEFIIYTAMALRNKAFGTAQEFVWAFDSSQYA 471
           +AH+ NGRF+V CGDGE+I+YTAMALRNK FG   EFVWA D + +A
Sbjct: 361 LAHSSNGRFVVACGDGEYIVYTAMALRNKDFGQGLEFVWAVDPNMFA 407



 Score = 72.1 bits (169), Expect = 2e-13
 Identities = 26/46 (56%), Positives = 37/46 (80%)
 Frame = +3

Query: 15  IWHAGTYRLKSSLNYGFERVWTISTMHGSNNVAVGYDEGTIMIKVG 152
           +WHA TYRL+++LNYG ERVW I    G+N +A+GYDEG++ +K+G
Sbjct: 255 LWHANTYRLETTLNYGLERVWCIQAQKGANTIAIGYDEGSVTLKLG 300



 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 313 EIYPQTIAHNPNGRFMVVCGDGEFII--YTAMALRNKAFGTAQEFVWAFD 456
           EI  ++I  + NG  + +CGD  F +  Y+A A+ N    T      AF+
Sbjct: 465 EITSKSIYWSDNGEMVAICGDDSFYVLKYSAEAVANATEVTEDGIEDAFE 514


>Z81492-5|CAB04024.1|  368|Caenorhabditis elegans Hypothetical
           protein E03H4.8 protein.
          Length = 368

 Score =  103 bits (247), Expect = 7e-23
 Identities = 51/112 (45%), Positives = 76/112 (67%), Gaps = 5/112 (4%)
 Frame = +1

Query: 151 AVEEPAISMDVNGGKIICAKHSELQQVNLKALPEGTEIKDGERVPVVAKDMGSCEIYPQT 330
           ++E PA+SMD + G+I+ A  SE+Q V L++L E  E  DGER+ +  K++GS EI PQT
Sbjct: 8   SIENPAVSMD-STGQILWAVQSEIQAVYLRSLFEQKEANDGERLTLSVKNLGSSEISPQT 66

Query: 331 IAHNPNGRFMVVCGDGEFIIYT-----AMALRNKAFGTAQEFVWAFDSSQYA 471
           +AH+ NG F + CGDG++I+YT     A+AL+ + +G   EFVWA   + +A
Sbjct: 67  LAHSSNGHFFMACGDGKYIVYTYKQYDAIALKIRHYGQGLEFVWAAHPNMFA 118


>AL032627-14|CAA21549.1|  386|Caenorhabditis elegans Hypothetical
           protein Y41C4A.11 protein.
          Length = 386

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = +3

Query: 15  IWHAGTYRLKSSLNYGFERVWTISTMHGSNNVAVGYDEGTIMIKV 149
           IW++ T+ L+  LN+   R W ++    S+ +AVG+D G + +++
Sbjct: 343 IWNSQTFSLEKELNFEKGRAWCVAA-GKSDAIAVGFDSGAVTVEI 386


>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.17 protein.
          Length = 1232

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 66  ERVWTISTMHGSNNVAVGYDEGTIMIKVGSRRACY 170
           ER W ++     N  A G+D G ++ K+   R  Y
Sbjct: 294 ERFWVLAAHPSLNMFAAGHDNGMVVFKIQRERPAY 328


>U42847-4|AAF23186.1| 1073|Caenorhabditis elegans
           Immunoglobulin-like cell adhesionmolecule family protein
           1 protein.
          Length = 1073

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 291 NDWYTLSVLYFCAFRESLQVDLLQFRVLSTDNLSSV 184
           ND    S ++   FR+     LL FRV S+D+  SV
Sbjct: 183 NDTIASSAIFTTQFRDGATESLLHFRVTSSDDGKSV 218


>AF099913-5|AAC68752.1|  305|Caenorhabditis elegans Hypothetical
           protein C29F9.11 protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 170 IAGSSTAHFYHYRTFVIPYSD 108
           IA +   HF+H++ F + Y+D
Sbjct: 204 IASTMIVHFFHFKCFTVDYTD 224


>U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon
           guidance protein 3,isoform b protein.
          Length = 1273

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 161 SSTAHFYHYRTFVIPYSDVVRTVHG 87
           S+   F +Y  FVIPY   V ++HG
Sbjct: 713 SNLMPFTNYEFFVIPYHSGVHSIHG 737


>U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon
           guidance protein 3,isoform a protein.
          Length = 1269

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 161 SSTAHFYHYRTFVIPYSDVVRTVHG 87
           S+   F +Y  FVIPY   V ++HG
Sbjct: 713 SNLMPFTNYEFFVIPYHSGVHSIHG 737


>AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.
          Length = 1273

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 161 SSTAHFYHYRTFVIPYSDVVRTVHG 87
           S+   F +Y  FVIPY   V ++HG
Sbjct: 713 SNLMPFTNYEFFVIPYHSGVHSIHG 737


>U64840-4|AAB04962.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 68 protein.
          Length = 316

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 300 VFSNDWYTLSVLYFCAFRES-LQVDLLQFRVLSTDNLSSVHV 178
           VFS+D  TLS+ Y   F +S +Q   +Q  V   ++LS+V V
Sbjct: 272 VFSSDLMTLSLPYILLFFDSNVQRQFMQKCVRKNNSLSTVFV 313


>AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical
           protein C46C11.1 protein.
          Length = 943

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 148 WAVEEPAISMDVNGGKIICAKHSELQQVNLKALPEG 255
           W  E+  +  D  GG +I + +  L Q+N+K  P+G
Sbjct: 447 WTGEKIVMVGDSAGGNLIMSVNLRLIQLNIKRQPDG 482


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,415,667
Number of Sequences: 27780
Number of extensions: 279002
Number of successful extensions: 742
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)