Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4805
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    29   1.6  
AF016679-6|AAB66156.1|  490|Caenorhabditis elegans Hypothetical ...    28   4.8  
U97012-5|AAK39149.1|  515|Caenorhabditis elegans Hypothetical pr...    27   6.4  
AL110479-20|CAB54371.1|  338|Caenorhabditis elegans Hypothetical...    27   6.4  

>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
            potassium channelsprotein 2 protein.
          Length = 1564

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 377  SSIVTTAAPPFKTETHYCFTAEIGRV 300
            SS++T A PP   E +YCF  +  RV
Sbjct: 925  SSMLTNAIPPIMVEDNYCFVVDGERV 950


>AF016679-6|AAB66156.1|  490|Caenorhabditis elegans Hypothetical
           protein T28C12.1 protein.
          Length = 490

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 137 REFQSYQMNTMADRWRYGWISATCS 63
           ++FQ++Q++  AD    GW+ A+CS
Sbjct: 58  KKFQTFQLDKTADFDFLGWVVASCS 82


>U97012-5|AAK39149.1|  515|Caenorhabditis elegans Hypothetical
           protein C04E6.5 protein.
          Length = 515

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = -2

Query: 421 QRKCATHLEI*VVRSQV*LQRLPHPSKPKRITASRQK 311
           + K A  LEI  VRS+V  ++L HPSK    T SR++
Sbjct: 63  ENKMAPLLEI--VRSEVFPEQLEHPSKNATNTGSRKR 97


>AL110479-20|CAB54371.1|  338|Caenorhabditis elegans Hypothetical
           protein Y105C5B.23 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -3

Query: 441 LETIDIYNVNAPPTLR--YKL*GLKY 370
           +ETIDIYN NA   LR  Y++ G KY
Sbjct: 91  IETIDIYNPNAIQDLRSKYEMKGDKY 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,294,614
Number of Sequences: 27780
Number of extensions: 222679
Number of successful extensions: 428
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)