Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4800
         (305 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.05c |his1||ATP phosphoribosyltransferase |Schizosaccha...    25   2.5  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    24   5.8  
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    24   5.8  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    23   7.7  

>SPAC25G10.05c |his1||ATP phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +2

Query: 50  PVLKLRVRRVRGYIVLVIFLVIN 118
           P+L+  + R+RGYI+   ++++N
Sbjct: 220 PLLQTIITRIRGYIIAQQYVLVN 242


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 169 DRL*ILYENGCLRVVFDINYEK 104
           DRL  L+ENG +R VFD+  E+
Sbjct: 499 DRLYSLHENGMVR-VFDVKSEE 519


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 34  LCYSIPGFEITCQTSSRIYCVSDISRN 114
           LC  + G +  CQT  R Y V+ +  N
Sbjct: 182 LCDDV-GLQYICQTYERFYAVASVLNN 207


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 120 SKTTRRHPFSYKIYNLSISVFRPLI*AVSILKIICP 227
           +KT+ +   +  +Y L     +P +   +ILK+ICP
Sbjct: 158 TKTSHKKRLNTMVYFLREWSIQPKLDHPNILKVICP 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,221,449
Number of Sequences: 5004
Number of extensions: 20196
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)