Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4800
         (305 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1183 + 28237467-28237612,28238035-28238089,28238216-282383...    29   0.95 
09_06_0287 + 22047404-22048409,22048754-22049967                       28   1.7  
12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693           27   2.9  
09_02_0331 - 7324332-7325924,7327220-7327402                           27   2.9  
02_01_0273 + 1822370-1822503,1822913-1823258,1823393-1823635,182...    26   5.1  

>06_03_1183 +
           28237467-28237612,28238035-28238089,28238216-28238354,
           28238433-28238487,28238578-28238646,28239338-28239560,
           28239645-28239740,28240708-28240827,28240937-28241062,
           28241369-28241524,28242706-28242828,28242913-28242980,
           28243119-28243254,28243365-28243530,28243615-28243853
          Length = 638

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
 Frame = +1

Query: 130 LEGTRFHTKF---IIYQSQFFGHLYKRC 204
           +EGT +HT+F   I Y + ++ +LY RC
Sbjct: 542 VEGTHWHTRFTHLINYGAGYYSYLYARC 569


>09_06_0287 + 22047404-22048409,22048754-22049967
          Length = 739

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 37 CYSIPGFEITCQTSS 81
          CY +PGF +TC  SS
Sbjct: 49 CYHLPGFNLTCDRSS 63


>12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693
          Length = 407

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 117 ISKTTRRHPFSYKIYNLSISVFRPLI*AVSILKII 221
           +S  TRR PFSY++  L ISV  P +  ++ + ++
Sbjct: 142 VSSPTRRSPFSYRL-QLVISVLIPTLQQLTGINVV 175


>09_02_0331 - 7324332-7325924,7327220-7327402
          Length = 591

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 154 LYENGCLRVVFDINYEKYH*HNISANSSDT*FQNREWN 41
           L+ + C  VVF+ + ++ + H  +  ++D  +Q R WN
Sbjct: 513 LFADLCKNVVFNEDDDECNYHRAACKAADERYQKRVWN 550


>02_01_0273 +
           1822370-1822503,1822913-1823258,1823393-1823635,
           1824212-1824268,1824407-1824487,1824725-1824786,
           1824990-1826004
          Length = 645

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 61  ITCQTSSRIYCVSDISRN*YQRRLEGTRFHTKFIIYQSQFFGHLY 195
           +TCQ++  IYC    S +      +  RF +K  +  S   GH+Y
Sbjct: 238 LTCQSNGEIYCYGVDSLD--AETQKAIRFISKVTLLASGGVGHIY 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,269,989
Number of Sequences: 37544
Number of extensions: 127580
Number of successful extensions: 224
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)