Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4800
         (305 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-3270|AAZ66056.1| 4705|Drosophila melanogaster CG7749-PB...    27   6.0  
AE014296-3269|AAF49078.2| 4705|Drosophila melanogaster CG7749-PA...    27   6.0  
AE014298-936|AAN09179.1|  213|Drosophila melanogaster CG32741-PA...    26   7.9  

>AE014296-3270|AAZ66056.1| 4705|Drosophila melanogaster CG7749-PB,
            isoform B protein.
          Length = 4705

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 151  YENGCLRVVFDINYEKYH*HNISANSSDT 65
            Y  G + VV +++YEK   H++S  ++D+
Sbjct: 2286 YNTGSIFVVNELDYEKISSHDVSIRATDS 2314


>AE014296-3269|AAF49078.2| 4705|Drosophila melanogaster CG7749-PA,
            isoform A protein.
          Length = 4705

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 151  YENGCLRVVFDINYEKYH*HNISANSSDT 65
            Y  G + VV +++YEK   H++S  ++D+
Sbjct: 2286 YNTGSIFVVNELDYEKISSHDVSIRATDS 2314


>AE014298-936|AAN09179.1|  213|Drosophila melanogaster CG32741-PA
           protein.
          Length = 213

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 13  GGWSCPGLCYSIPGFEITC 69
           GGW C  +C  + GF + C
Sbjct: 157 GGWGCVCVCVCVIGFCVVC 175


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,449,006
Number of Sequences: 53049
Number of extensions: 213568
Number of successful extensions: 292
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 568694034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)