Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4800
         (305 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   2.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   2.0  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   2.6  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   2.6  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   2.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   2.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   2.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   3.4  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 127 RLEGTRFHTKFIIYQS 174
           +L+ T FH  +IIY+S
Sbjct: 34  KLQPTYFHHTYIIYES 49


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 127 RLEGTRFHTKFIIYQS 174
           +L+ T FH  +IIY+S
Sbjct: 34  KLQPTYFHHTYIIYES 49


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 151 YENGCLRVVFDINY 110
           Y N C ++ ++INY
Sbjct: 100 YNNNCKKLYYNINY 113


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 151 YENGCLRVVFDINY 110
           Y N C ++ ++INY
Sbjct: 105 YNNNCKKLYYNINY 118


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 151 YENGCLRVVFDINY 110
           Y N C ++ ++INY
Sbjct: 105 YNNNCKKLYYNINY 118


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 151 YENGCLRVVFDINY 110
           Y N C ++ ++INY
Sbjct: 105 YNNNCKKLYYNINY 118


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 151 YENGCLRVVFDINY 110
           Y N C ++ ++INY
Sbjct: 105 YNNNCKKLYYNINY 118


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 77  LV*HVISKPGME*HNPGHDH 18
           L+ +V S PG   H  GH H
Sbjct: 404 LLNNVYSTPGPHHHTMGHGH 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,788
Number of Sequences: 438
Number of extensions: 1543
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)