Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4799
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.47 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.83 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.7  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 2   TFLMSKGRKKILTPGEPRTRLRIKPTSKCKMFKLKLY 112
           T +  KGR K  T  +PR +   K  ++   F  KL+
Sbjct: 424 THVWKKGRDKKSTSKKPRRKFHFKQIARAVKFTSKLF 460


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 77  TSKCKMFKLKLYFICDF 127
           TS   +++LKLY  CD+
Sbjct: 32  TSTSALYRLKLYLFCDY 48


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 11  MSKGRKKILTPGE 49
           MS+  KK+L+PGE
Sbjct: 904 MSESSKKVLSPGE 916


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 636 KRRPVNCNTTHYRANWVPGP 577
           K++P +C+T  YR   V  P
Sbjct: 565 KKQPSDCDTLEYRNGEVTTP 584


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,919
Number of Sequences: 438
Number of extensions: 3771
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)