Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4792
         (723 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    27   0.12 
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   5.8  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   5.8  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   5.8  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   5.8  

>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 501 YDLRSSPRFREFTTEILKKNVIFLTDTGH 415
           + +RS+P   E   E+LKK V +   TGH
Sbjct: 103 FGVRSAPSTHEELLEVLKKVVTYSVKTGH 131


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -1

Query: 351 RVKLWLMNRQLSH 313
           ++K+W  NR++ H
Sbjct: 131 QIKIWFQNRRMKH 143


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 351 RVKLWLMNRQLSH 313
           +VK+W  NR++ H
Sbjct: 47  QVKVWFQNRRMKH 59


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -1

Query: 351 RVKLWLMNRQLSH 313
           ++K+W  NR++ H
Sbjct: 122 QIKIWFQNRRMKH 134


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 351 RVKLWLMNRQLSH 313
           +VK+W  NR++ H
Sbjct: 178 QVKVWFQNRRMKH 190


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,248
Number of Sequences: 336
Number of extensions: 3450
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)