Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4789
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   3.7  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    25   6.5  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    25   8.6  

>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 99  IELMGAMWAQDSP*SKEHEIKPVLRSIWSRGVSGMMLTG 215
           I+L   +WA D+P  K   +  V RS  S G  G  +TG
Sbjct: 100 IKLGKQLWADDAPLEKRKRLDAVSRSTTS-GSLGFRITG 137


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 571 LDRLKLCVRVQIVTGLTCSEHAI 503
           L R+ LC  ++++  LTCS H I
Sbjct: 30  LKRVILCPSMELIAILTCSNHLI 52


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 560 QTLCPCPNRHWSNMQRTCNSHQ 495
           Q LC CPN +  + +   N HQ
Sbjct: 15  QNLCSCPNHYAQHSKNKRNYHQ 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,572
Number of Sequences: 5004
Number of extensions: 50003
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)