Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4789
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807...    29   3.8  
01_06_0241 - 27813076-27813622,27813695-27814125                       28   5.1  
05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421...    28   6.7  
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998...    28   6.7  
01_06_0589 - 30446684-30446790,30446977-30447187,30447316-304473...    28   6.7  
10_06_0080 + 10441055-10443856                                         27   8.9  

>04_01_0617 -
           8076624-8076971,8077761-8077883,8077965-8078035,
           8078108-8078360,8078613-8078768,8078854-8079770,
           8079858-8079927,8082310-8082416,8082722-8082755,
           8083621-8083940,8084031-8084820,8084890-8085046,
           8085647-8086068
          Length = 1255

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -2

Query: 602 TSAPRLPLSCP--RPAQTLCPCPNR 534
           TSAPRLP S P   PA +  P PNR
Sbjct: 20  TSAPRLPTSAPPISPASSRKPKPNR 44


>01_06_0241 - 27813076-27813622,27813695-27814125
          Length = 325

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -2

Query: 314 YEGPDLSHHISKVNNFKDSLASTGQKHLLSYSASRQHHTGNSSRPNRPKNRF 159
           ++ P   H I+K    +D+   T ++    Y   R +H GNSSR   P+ RF
Sbjct: 264 HDFPTFQHMINKALLLEDARKETTEE----YKKRRSNHQGNSSR-GAPRPRF 310


>05_05_0034 -
           21741148-21741275,21741890-21741928,21742007-21742121,
           21742227-21742292,21743213-21743371,21743573-21743609,
           21743757-21744194,21744735-21744817,21744920-21744956,
           21745146-21745214,21745316-21745407,21745481-21745565,
           21745903-21745982,21746327-21746724,21746813-21747717,
           21747825-21747915,21748617-21750680,21750681-21750749,
           21750850-21751273,21751644-21751763
          Length = 1832

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 351 SLLITRNSFAGVLACSH*KNSSGLNRLCLRAAFESYYDFAYIKF 482
           S  + RNSF  V+     KN+S  +    R+  E+ Y+ +YIKF
Sbjct: 641 SARVRRNSFLSVMDLE--KNTSQESTRLPRSCMEALYESSYIKF 682


>05_05_0030 -
           21698625-21698752,21699589-21699627,21699708-21699822,
           21699927-21699992,21701064-21701203,21701424-21701473,
           21701608-21702045,21702757-21702839,21702941-21702977,
           21703366-21703457,21703531-21703615,21703950-21704029,
           21704049-21704105,21704350-21704747,21706322-21707223,
           21707331-21707421,21708123-21710273,21710375-21710813,
           21711180-21711299
          Length = 1836

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 351 SLLITRNSFAGVLACSH*KNSSGLNRLCLRAAFESYYDFAYIKF 482
           S  + RNSF  V+     KN+S  +    R+  E+ Y+ +YIKF
Sbjct: 652 SARVRRNSFLSVMDLE--KNTSQESTRLPRSCMEALYESSYIKF 693


>01_06_0589 -
           30446684-30446790,30446977-30447187,30447316-30447399,
           30447550-30448593
          Length = 481

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +3

Query: 387 LACSH*KNSSGLNRLCLRA--AFESYYDFAYIK 479
           L C+  KN +GL+++C+R+      + DF+Y+K
Sbjct: 262 LECTKLKNITGLDKICVRSRNLVRLFGDFSYLK 294


>10_06_0080 + 10441055-10443856
          Length = 933

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/68 (27%), Positives = 35/68 (51%)
 Frame = +2

Query: 290 DVTDQVLHIGNFKQETITRS*FTDNEEFFRRRSSLFSLKKLIWLESTLSPSRVRIIL*FR 469
           D+ D  LH+   KQ+T      T  ++ F+R + LFSL +   + S++  +   ++  F+
Sbjct: 86  DIVDDYLHLVGHKQDT---GWGTYLKKGFKRPNVLFSLNR---IASSIKDAEANLVHLFQ 139

Query: 470 LYKIWVTM 493
             + WV M
Sbjct: 140 AKERWVWM 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,663,624
Number of Sequences: 37544
Number of extensions: 311287
Number of successful extensions: 625
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)