Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4787
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom... 27 2.2
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po... 27 2.2
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i... 24 2.4
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 27 2.9
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.8
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 3.8
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 26 5.0
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 26 5.0
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 6.6
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c... 26 6.6
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 26 6.6
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 8.8
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f... 25 8.8
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 8.8
>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 453
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 276 IVTLEALRPFIVDNFPQNPTPFPYLRH 356
I+ +E F DN P+NP P Y H
Sbjct: 334 IIPVETALGFFTDNTPENPLPTSYQVH 360
>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 434
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 654 CLRLV*ISSPHQSKGERAWCPSRTVPTC-SQTSLPP 550
CL + +S+ +K ++ W SR +P C +Q L P
Sbjct: 278 CLERMKVSTRQYAKSQKKWIQSRFLPMCLAQQDLSP 313
>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
5-->4-isomerase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 340
Score = 24.2 bits (50), Expect(2) = 2.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 203 HPEVGVHTSRAVHSQEPRQYHLAVDSDLRGTASV 304
HP V +HT+ VH+ R + V+ D GTA++
Sbjct: 70 HPRVVIHTASPVHNL-ARDIYFEVNVD--GTANI 100
Score = 21.4 bits (43), Expect(2) = 2.4
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +2
Query: 137 LRQRCRRQNFWFRAFERLE 193
+RQ C R+N AF+ E
Sbjct: 19 IRQLCERENLRIAAFDLFE 37
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 620 W*GEEIHTRRRHGHSTRPLPQRDRTQNRVREMRGKLLPAYL 742
W H+R R S +PLP +D R++ G+LL ++
Sbjct: 16 WPNVNGHSRTRSVPSLKPLPHQDSKNLLYRQICGRLLAQHV 56
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 469 NSSWRSKL*RAATSDRETCSARAPSAGRRQTR 564
NS++ L R T+D+E + PS+ RR +R
Sbjct: 2401 NSNYSGSLMRRRTNDQEEDALATPSSSRRDSR 2432
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -2
Query: 202 SRALQSFKSTKPKILSSASLAQTLSPSCVGGPPTNAPTSSSKSIS 68
S +L S + + SS+SLA + + S PT++ +SS + S
Sbjct: 72 SSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATS 116
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -2
Query: 709 PNPILSPVALRQWPRRVTVSPSCMNFLSSPV 617
PN IL+ R + R +PS MNFL+SPV
Sbjct: 469 PNAILTSFN-RNFRSRNDGNPSTMNFLTSPV 498
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 5.0
Identities = 20/81 (24%), Positives = 36/81 (44%)
Frame = -2
Query: 274 HGEMVLPRFLAVNGPRGMYSHFWMSRALQSFKSTKPKILSSASLAQTLSPSCVGGPPTNA 95
H E ++ R L +N R + + + R +F S + S+ ++ P P
Sbjct: 146 HTERLVGRVLRLN--RYLQNSELLDRNSSTFGSNPNSVFSAQPTEPSVEPP-TSSFPIQP 202
Query: 94 PTSSSKSISLQGPKWGAAPST 32
P S+SIS+ P+ + PS+
Sbjct: 203 PLPPSRSISISNPQSLSFPSS 223
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 647 RRHGHSTRPLPQRDRTQNR 703
RR +S P P+RDR +NR
Sbjct: 289 RRDAYSRSPSPRRDREENR 307
>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 248
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 699 IGFGRCEGNCYRPTFPD 749
IG GRC GN P +P+
Sbjct: 159 IGIGRCNGNRVLPPYPE 175
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 174 VLLNDWSARDIQKWEYIPLGPFTAKN 251
VL+N WS D +K +I L TAK+
Sbjct: 196 VLINSWSESDQEKKSFIDLVRSTAKS 221
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 8.8
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 157 SSASLAQTLSPSCVGGPPTNAPTSS-SKSISLQGPKWGAAPST 32
SSA +Q S S V P +AP S S S Q P AAP+T
Sbjct: 140 SSAPASQEPSASGVNAPTVSAPNSMVSPPPSFQPPS-AAAPAT 181
>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
factor complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 181 KSTKPKILSSASLAQTLSPSCVGGPPTNAPTSSSKSIS 68
K++ KIL S +L Q+ P CV PT + SIS
Sbjct: 119 KTSVLKILESYALKQSRHPICVNLDPTQPMLALPGSIS 156
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 172 KPKILSSASLAQTLSPSCVGGPPTNAPTSSSKSISLQGPK 53
K + L+ + T +P+ V PP++A SSSK + P+
Sbjct: 610 KDRSLNVTPSSSTPTPASVLAPPSSASLSSSKDANRSVPE 649
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,471,805
Number of Sequences: 5004
Number of extensions: 80816
Number of successful extensions: 304
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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