Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4787
(752 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39852-6|AAK39259.1| 418|Caenorhabditis elegans Hypothetical pr... 302 1e-82
Z92790-5|CAI79208.1| 169|Caenorhabditis elegans Hypothetical pr... 35 0.054
AF039713-13|AAB96719.2| 690|Caenorhabditis elegans Hypothetical... 30 1.5
AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid deplet... 30 1.5
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 30 2.0
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 30 2.0
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ... 30 2.0
AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical ... 29 3.5
AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical ... 29 3.5
AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical ... 28 6.2
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 28 8.2
U58761-5|ABC71835.1| 148|Caenorhabditis elegans Hypothetical pr... 28 8.2
U58761-4|AAB00715.1| 631|Caenorhabditis elegans Hypothetical pr... 28 8.2
>U39852-6|AAK39259.1| 418|Caenorhabditis elegans Hypothetical
protein K10C2.4 protein.
Length = 418
Score = 302 bits (742), Expect = 1e-82
Identities = 137/238 (57%), Positives = 172/238 (72%)
Frame = +3
Query: 9 RPYGQTLPVEGAAPHFGPCKLMDFELEVGAFVGGPPTQLGERVCAKDAEDKIFGFVLLND 188
RP GQT + P FGP KLMDFELE+ FVGGP +LG RV + AED+IFG VL+ND
Sbjct: 176 RPVGQTKAPDAEVPSFGPSKLMDFELEMAFFVGGPENELGTRVPIEKAEDRIFGVVLMND 235
Query: 189 WSARDIQKWEYIPLGPFTAKNLGSTISPWIVTLEALRPFIVDNFPQNPTPFPYLRHDDKF 368
WSARDIQ WEY+PLGPF AK+ +T+SPW+V++EALRP+ V+N Q+P P YL HDD F
Sbjct: 236 WSARDIQAWEYVPLGPFLAKSFATTVSPWVVSIEALRPYFVENPVQDPVPPAYLHHDDPF 295
Query: 369 NFDIKLEVDIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTITGCNLRPGDLLGSGTISG 548
DI L V I+ E V VC++N++++YWT+KQQLA T+ GCNLR GDLLGSGT+SG
Sbjct: 296 TLDINLAVSIRPEGDAVDHIVCKTNFKHLYWTLKQQLAHHTVNGCNLRAGDLLGSGTVSG 355
Query: 549 EAADSFGSMLELSWKGTKPVRLSTGEERKFIQDGDTVTLRGHCLNATGLKIGFGRCEG 722
++GSMLELSW+G K V + + E RKF++DGD V L G C G++IGFG C G
Sbjct: 356 PEEGAYGSMLELSWRGAKEVPVGS-EIRKFLKDGDEVNLSGVC-EKNGVRIGFGECRG 411
>Z92790-5|CAI79208.1| 169|Caenorhabditis elegans Hypothetical
protein H03G16.6 protein.
Length = 169
Score = 35.1 bits (77), Expect = 0.054
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -2
Query: 622 PVERRTGLVPFQDSSNMLPNESAASPLMVPEPSKSPGLRLQPVIVCCASCCFTV 461
P R+ L+P +S+ P SA +P+ VPE K R ++ CC C T+
Sbjct: 101 PKVRKEALMP---TSSPTPGTSAYTPITVPEQQKRAPTRTAKILSCCRIGCITL 151
>AF039713-13|AAB96719.2| 690|Caenorhabditis elegans Hypothetical
protein F57B10.1 protein.
Length = 690
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -2
Query: 202 SRALQSFKSTKPKILSSASLAQTLSPSCVGGPPTNAPTSSSKSISLQGPKWG-AAPSTGK 26
S L FKS++P++L+ AS++ +PS P + + T ++ S S G STG+
Sbjct: 189 SNGLVRFKSSQPRVLNPASISLN-APSSSFNPQSTSSTPATSSSSSSSTNGGFVKSSTGE 247
>AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid depleted
protein 3 protein.
Length = 1599
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 193 VHVTSRSGSTYLSGRSQPRTSAVP 264
+H SR G+TY++G P+TS VP
Sbjct: 652 LHNKSRFGNTYINGGGGPKTSTVP 675
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Frame = -2
Query: 721 PSHLP-NPILSPVALRQWPRRVTVSPSCMNFLSSPVERRTGLVPFQDSSNMLPNE---SA 554
P + P +P SP + P T +P+ SSP T S + P+ S
Sbjct: 1742 PQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYTPSSPQYSP 1801
Query: 553 ASPLMVPEPSKSPGLRLQ 500
SP P PS+ PG Q
Sbjct: 1802 TSPTYTPSPSEQPGTSAQ 1819
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Frame = -2
Query: 721 PSHLP-NPILSPVALRQWPRRVTVSPSCMNFLSSPVERRTGLVPFQDSSNMLPNE---SA 554
P + P +P SP + P T +P+ SSP T S + P+ S
Sbjct: 1749 PQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYTPSSPQYSP 1808
Query: 553 ASPLMVPEPSKSPGLRLQ 500
SP P PS+ PG Q
Sbjct: 1809 TSPTYTPSPSEQPGTSAQ 1826
>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
protein H20J04.2 protein.
Length = 1427
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 11 ALRTDLACRRCGAPLRSLQTDGLRTGGGRVCRRAPHTTGREGLRQRCRRQN 163
A +T C P S + +RT GR +R ++ EGL + R+ N
Sbjct: 1204 APKTAEPAESCSTPTTSKEPPTIRTASGRAVKRVHYSDIHEGLSLKNRKSN 1254
>AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical
protein Y46G5A.1b protein.
Length = 1021
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 629 EEIHTRRRHGHSTRPLPQRDRTQNRVRE 712
E +HT RRH H T Q R +R RE
Sbjct: 85 ERVHTERRHHHQTSSPSQYPRPPSRDRE 112
>AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical
protein Y46G5A.1a protein.
Length = 1085
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 629 EEIHTRRRHGHSTRPLPQRDRTQNRVRE 712
E +HT RRH H T Q R +R RE
Sbjct: 85 ERVHTERRHHHQTSSPSQYPRPPSRDRE 112
>AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical
protein Y41D4B.18 protein.
Length = 338
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = -2
Query: 178 STKPKILS---SASLAQTLSPSCVGGPPTNAPTSSSKSISLQ 62
+T PK S S+S + T SP+ P T+ PT++S+S + Q
Sbjct: 268 ATSPKTSSQPVSSSTSSTSSPAPTNPPTTSRPTTASQSTASQ 309
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 27.9 bits (59), Expect = 8.2
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -2
Query: 202 SRALQSFKSTKP--KILSSASLAQTLSPSCVGGPPTNAPTSSSKSISLQGPKWGAAPSTG 29
SR + SF S KP + +SS S A + S SC PT+ TS+ S Q + + PS G
Sbjct: 280 SRTVASFGS-KPSNENISSNSSALSSSSSCFAAKPTS--TSAGGSFGNQPSSFSSKPSFG 336
>U58761-5|ABC71835.1| 148|Caenorhabditis elegans Hypothetical
protein C01F1.3b protein.
Length = 148
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 721 PSHLPNPILSPVALRQWPRRVTVSPSCMNFLSSPVERRTG 602
P +L + I+ L P +T+ P CMN + + +E+R+G
Sbjct: 27 PRNLLSKIIKYKELFDIPVSLTILPDCMNAMCNLMEQRSG 66
>U58761-4|AAB00715.1| 631|Caenorhabditis elegans Hypothetical
protein C01F1.3a protein.
Length = 631
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 721 PSHLPNPILSPVALRQWPRRVTVSPSCMNFLSSPVERRTG 602
P +L + I+ L P +T+ P CMN + + +E+R+G
Sbjct: 510 PRNLLSKIIKYKELFDIPVSLTILPDCMNAMCNLMEQRSG 549
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,949,086
Number of Sequences: 27780
Number of extensions: 486453
Number of successful extensions: 1668
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1666
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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