Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4787
(752 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ855487-1|ABH88174.1| 125|Apis mellifera chemosensory protein ... 25 1.0
AJ973402-1|CAJ01449.1| 125|Apis mellifera hypothetical protein ... 25 1.0
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 24 1.8
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 24 1.8
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 3.1
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.1
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 23 3.1
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 4.1
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 23 4.1
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 22 5.4
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 5.4
DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 vari... 22 7.1
DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 vari... 22 7.1
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 7.1
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 22 7.1
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 7.1
AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase p... 21 9.4
AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase p... 21 9.4
>DQ855487-1|ABH88174.1| 125|Apis mellifera chemosensory protein 6
protein.
Length = 125
Score = 24.6 bits (51), Expect = 1.0
Identities = 13/56 (23%), Positives = 22/56 (39%)
Frame = +2
Query: 32 CRRCGAPLRSLQTDGLRTGGGRVCRRAPHTTGREGLRQRCRRQNFWFRAFERLECT 199
C G L+ + D L TG + + HT + + +R W R + + T
Sbjct: 53 CTNEGRELKKILPDALSTGCNKCNEKQKHTANKVVNYLKTKRPKDWERLSAKYDST 108
>AJ973402-1|CAJ01449.1| 125|Apis mellifera hypothetical protein
protein.
Length = 125
Score = 24.6 bits (51), Expect = 1.0
Identities = 13/56 (23%), Positives = 22/56 (39%)
Frame = +2
Query: 32 CRRCGAPLRSLQTDGLRTGGGRVCRRAPHTTGREGLRQRCRRQNFWFRAFERLECT 199
C G L+ + D L TG + + HT + + +R W R + + T
Sbjct: 53 CTNEGRELKKILPDALSTGCNKCNEKQKHTANKVVNYLKTKRPKDWERLSAKYDST 108
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 23.8 bits (49), Expect = 1.8
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -3
Query: 426 WSPPGTFQSECPLPV 382
W+PP F+S C + V
Sbjct: 135 WTPPAIFKSSCEIDV 149
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 23.8 bits (49), Expect = 1.8
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 284 LRGTASVHRRQLPSEPDSVPLLETRR*IQFRHQTGSGHSD*KVPGGDH 427
L+ A H+ + PDS PL+E+ Q HQ + H + G H
Sbjct: 143 LQAAAVDHQGSVLDGPDSPPLVES----QMHHQMHTQHPHMQPQQGQH 186
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.0 bits (47), Expect = 3.1
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -3
Query: 426 WSPPGTFQSECPLPV 382
W PP +QS C + V
Sbjct: 141 WVPPAIYQSSCTIDV 155
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.0 bits (47), Expect = 3.1
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = -3
Query: 429 QWSPPGTFQSECPLPV 382
+W PP ++S C + V
Sbjct: 142 EWKPPAIYKSSCEIDV 157
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 23.0 bits (47), Expect = 3.1
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = -3
Query: 429 QWSPPGTFQSECPLPV 382
+W PP ++S C + V
Sbjct: 138 EWKPPAIYKSSCEIDV 153
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 4.1
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = -3
Query: 426 WSPPGTFQSECPLPV 382
W PP ++S C + V
Sbjct: 143 WQPPAVYKSSCSIDV 157
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 22.6 bits (46), Expect = 4.1
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 94 PTSSSKSISLQGPKWG 47
P+SS+KS L+GP+ G
Sbjct: 199 PSSSTKSYVLEGPRNG 214
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 22.2 bits (45), Expect = 5.4
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = -2
Query: 169 PKILSSASLAQTLSPSCVGGPPTNAPTSSSKSIS 68
P +LS + GGPPT A T ++ ++
Sbjct: 379 PAVLSRIGIILASPLKREGGPPTGATTGPNEIVT 412
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 22.2 bits (45), Expect = 5.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 233 PERYVLPLLDVTCTPVVQKHET 168
P +LP++ V C PV Q +++
Sbjct: 783 PRIPILPMIPVYCVPVPQVNDS 804
>DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 variant
2 precursor protein.
Length = 94
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -3
Query: 258 CRGSWL*TAREVCTPTSGC 202
CR +L ++VC P S C
Sbjct: 73 CRLGYLRNKKKVCVPRSKC 91
>DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 variant
1 precursor protein.
Length = 92
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -3
Query: 258 CRGSWL*TAREVCTPTSGC 202
CR +L ++VC P S C
Sbjct: 73 CRLGYLRNKKKVCVPRSKC 91
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/28 (28%), Positives = 14/28 (50%)
Frame = -3
Query: 465 PSNTCTDSLNGKQWSPPGTFQSECPLPV 382
P+N + + PPG F+S C + +
Sbjct: 125 PTNVVVKNNGTCLYVPPGIFKSTCKIDI 152
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 21.8 bits (44), Expect = 7.1
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +3
Query: 213 WEYIPLGPFTAKNLGSTI 266
W + P GPFT +G +
Sbjct: 553 WRFQPWGPFTWGGIGVVV 570
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 21.8 bits (44), Expect = 7.1
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = -3
Query: 426 WSPPGTFQSECPLPV 382
W PP ++S C + V
Sbjct: 148 WKPPAIYKSSCEINV 162
>AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 21.4 bits (43), Expect = 9.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 118 HNWARGSAPKMPKTKFLVS 174
++ ARG P KT FL+S
Sbjct: 197 YDTARGMLPDPKKTPFLIS 215
>AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 21.4 bits (43), Expect = 9.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 118 HNWARGSAPKMPKTKFLVS 174
++ ARG P KT FL+S
Sbjct: 197 YDTARGMLPDPKKTPFLIS 215
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,975
Number of Sequences: 438
Number of extensions: 6150
Number of successful extensions: 33
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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