Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4784
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    27   2.6  
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    25   6.0  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   7.9  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   7.9  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   7.9  

>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 345 AKGHTRRGYTWEVHVS-GLFVFYWW*GFLC-ARTAFTIL 235
           A G T   Y +  +V  G FVFYW+ GF+    + FT+L
Sbjct: 323 ANGWTISRYRFFAYVMIGSFVFYWFPGFIFKGLSYFTVL 361


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 572 VTIIAILKCPERATHSHFVQSSMSVEPCVWE 480
           + I+ + +CP+RA  SH    +  V P ++E
Sbjct: 426 IPIVMVTRCPQRARQSHL---NRGVYPVIYE 453


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 399 TTVDK*WSLRPGWC 440
           T VD+ WSL PG+C
Sbjct: 511 TLVDQIWSLLPGYC 524


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 411 K*WSLRPGWCSYSETRYSVTAISLPDT 491
           K W  +PGW  Y++   S++ +  PD+
Sbjct: 140 KTWKRQPGWTKYAKDG-SISCVPYPDS 165


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
 Frame = +3

Query: 252 CGRTRSPTTSKIQIIRLHAPPKCTLYECVLSHKPQTSY*LFALTVLFAFTTVDK*WSLRP 431
           CG T     S + II LH P +    E +LS +      LF +       ++D+   L P
Sbjct: 645 CGITSQKIKSSLYIIDLHYPSQ--QLESILSFE-----WLFKM-------SLDRRVDLPP 690

Query: 432 GWCSY--SETRYSVTAI--SLPDTRF-NTH*RLHK 521
           GWC Y  +   + + +   SLPD  F NT  + H+
Sbjct: 691 GWCEYCLAHQPFLLRSFIRSLPDCLFINTQVKHHE 725


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,016
Number of Sequences: 5004
Number of extensions: 43846
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)