Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4784
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016687-6|AAC48092.3|  309|Caenorhabditis elegans Serpentine re...    31   0.58 
Z11115-15|CAA77456.1|  316|Caenorhabditis elegans Hypothetical p...    27   7.2  

>AF016687-6|AAC48092.3|  309|Caenorhabditis elegans Serpentine
           receptor, class h protein282 protein.
          Length = 309

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -3

Query: 256 PHGFHHPAYFCREAVMSFGLKGEA-AVVKAVMRFSFKGGVTVVL*TWWRHLRFKYLLASV 80
           P GF H       A + FG+   A   +  V  F  +  V     TWWRH+R+ + + ++
Sbjct: 80  PLGFLHMIGIGTGAQIYFGMTIAAFCAISTVQLFENRFFVLFAEKTWWRHVRYPFKVFNI 139

Query: 79  T 77
           T
Sbjct: 140 T 140


>Z11115-15|CAA77456.1|  316|Caenorhabditis elegans Hypothetical
           protein ZK637.11 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 181 VVKAVMRFSFKGGVTVVL*TWWRHLRFKYLLASVTTS 71
           V+K  + FS K   T  + TW  HL+  Y L +VT S
Sbjct: 75  VIKKRLTFSKKSHSTSEIETWNAHLQVDYHLETVTPS 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,203,137
Number of Sequences: 27780
Number of extensions: 255723
Number of successful extensions: 549
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)