Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4780
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0607 - 11183382-11183387,11183481-11183637,11184220-111842...    31   0.91 
02_03_0032 + 14112354-14112417,14112471-14112549,14114435-141145...    29   3.7  
08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967...    29   4.9  
01_01_0712 - 5509748-5509990,5510099-5510554,5510959-5511951           28   8.5  

>09_02_0607 -
           11183382-11183387,11183481-11183637,11184220-11184284,
           11184397-11184469,11184759-11184905,11185515-11185562,
           11185637-11185716,11186112-11186439,11186525-11186576,
           11187397-11187523,11187613-11187990
          Length = 486

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 242 GFQRVPPLSCYPGHAKLSYSAPWSPD 165
           GF+R+P L C+P   +L+    WSP+
Sbjct: 202 GFKRIPSLECWPDVLQLTEPENWSPN 227


>02_03_0032 +
           14112354-14112417,14112471-14112549,14114435-14114551,
           14114721-14114802,14115734-14115868,14115948-14116123,
           14116219-14116370,14116433-14117622
          Length = 664

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
 Frame = +2

Query: 302 KFDKVPLPYEKLTKNLEVVKKRLGRELTLSEKILYSHLDDPKGQEI-ERGASYLRLRPDR 478
           +FD  P P E+      +   +  RE+   +  L++H    K +E+   G   +   PD 
Sbjct: 259 QFDVAPKPLEETKSYTAIAVLQQMREMVHMKAKLFAHPSPAKQKEVLFEGMLLISNSPDS 318

Query: 479 VAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGEXDLARAKDLNK 637
           V  Q + +       +SS  P +  P+    DHL   QV    D+   +D +K
Sbjct: 319 VLTQSSLS-------VSSSSPEIGDPN----DHL---QVDSSQDIVHIEDRSK 357


>08_02_1540 +
           27694565-27694579,27696364-27696447,27696599-27696731,
           27696840-27696951,27697530-27697629,27697810-27697937,
           27698046-27698115,27698548-27698636,27698719-27698764,
           27698854-27698924,27699002-27699075,27699341-27699433,
           27699539-27699572,27699704-27699789,27702147-27702223,
           27702445-27702533,27702630-27702813,27703068-27703249,
           27703962-27704064,27704159-27704490,27704577-27705018,
           27705749-27705846,27706988-27707081,27707666-27707787,
           27708025-27708078,27708185-27708304,27708595-27708799,
           27708889-27709059,27709155-27709310,27709375-27709431,
           27709474-27709580,27709708-27709798,27709931-27710072,
           27710149-27710305,27710400-27710516,27710596-27710722,
           27710844-27711066,27711460-27711466,27711656-27711788
          Length = 1574

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 557 STIHCDHLIEAQVGGEXDLARAKDL--NKEVYKFLETAGAKYGVGFWEARLWYYP 715
           S++HC  L   +     + A  +D+  N +    + TA  ++G+  W+ R+  YP
Sbjct: 180 SSLHCWDLRSMKKSNAIEHAHFRDVDYNPKKQHLITTAEDEFGIRLWDLRMLKYP 234


>01_01_0712 - 5509748-5509990,5510099-5510554,5510959-5511951
          Length = 563

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 332 FRKARVPCRTWTSPPGPRRRSME 264
           FR+AR   R +TSPP P+RR  E
Sbjct: 160 FREARASSRRFTSPP-PKRRGSE 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,657,642
Number of Sequences: 37544
Number of extensions: 438524
Number of successful extensions: 1137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)