Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4780
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase prote...   222   2e-58
L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase prote...   130   7e-31
L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase prote...   105   3e-23
Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical pr...    32   0.36 
Z50740-2|CAA90608.1|  383|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    28   7.7  

>L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase protein
           2, isoform a protein.
          Length = 777

 Score =  222 bits (542), Expect = 2e-58
 Identities = 107/138 (77%), Positives = 121/138 (87%), Gaps = 1/138 (0%)
 Frame = +2

Query: 284 AQVAMSKFD-KVPLPYEKLTKNLEVVKKRLGRELTLSEKILYSHLDDPKGQEIERGASYL 460
           ++VA+SKF+ K  LPYEKL++ +++VK RL R LTLSEKILY HLD PK Q+IERG SYL
Sbjct: 27  SKVAISKFEPKSYLPYEKLSQTVKIVKDRLKRPLTLSEKILYGHLDQPKTQDIERGVSYL 86

Query: 461 RLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGEXDLARAKDLNKE 640
           RLRPDRVAMQDATAQMAMLQFISSGLP+ AVPSTIHCDHLIEAQ GG  DLARAKDLNKE
Sbjct: 87  RLRPDRVAMQDATAQMAMLQFISSGLPKTAVPSTIHCDHLIEAQKGGAQDLARAKDLNKE 146

Query: 641 VYKFLETAGAKYGVGFWE 694
           V+ FL TAG+KYGVGFW+
Sbjct: 147 VFNFLATAGSKYGVGFWK 164


>L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase protein
           2, isoform c protein.
          Length = 683

 Score =  130 bits (315), Expect = 7e-31
 Identities = 60/70 (85%), Positives = 64/70 (91%)
 Frame = +2

Query: 485 MQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGEXDLARAKDLNKEVYKFLETA 664
           MQDATAQMAMLQFISSGLP+ AVPSTIHCDHLIEAQ GG  DLARAKDLNKEV+ FL TA
Sbjct: 1   MQDATAQMAMLQFISSGLPKTAVPSTIHCDHLIEAQKGGAQDLARAKDLNKEVFNFLATA 60

Query: 665 GAKYGVGFWE 694
           G+KYGVGFW+
Sbjct: 61  GSKYGVGFWK 70


>L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase protein
           2, isoform b protein.
          Length = 665

 Score =  105 bits (252), Expect = 3e-23
 Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 1/77 (1%)
 Frame = +2

Query: 284 AQVAMSKFD-KVPLPYEKLTKNLEVVKKRLGRELTLSEKILYSHLDDPKGQEIERGASYL 460
           ++VA+SKF+ K  LPYEKL++ +++VK RL R LTLSEKILY HLD PK Q+IERG SYL
Sbjct: 27  SKVAISKFEPKSYLPYEKLSQTVKIVKDRLKRPLTLSEKILYGHLDQPKTQDIERGVSYL 86

Query: 461 RLRPDRVAMQDATAQMA 511
           RLRPDRVAMQDA   MA
Sbjct: 87  RLRPDRVAMQDAVDVMA 103


>Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical
           protein F15D3.6 protein.
          Length = 209

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 290 VAMSKFDKVPLPYEKLTKNLEVVKKRLGRELTLSEKILYSHLDDP 424
           VA + F K P P  +    ++VVK+ L     L+E+I+ SH   P
Sbjct: 17  VAQAAFRKYPNPLNRSITGIDVVKQTLEAGKILTERIIQSHFSIP 61


>Z50740-2|CAA90608.1|  383|Caenorhabditis elegans Hypothetical
           protein F31B12.3 protein.
          Length = 383

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +2

Query: 305 FDKVPLPYEKLTKNLEVVKKRLGRELTLSEKILYSHLD 418
           FDKV  P  K  KN+ + K +L   L LS KIL+   D
Sbjct: 128 FDKVVKP--KTGKNIVIYKVKLLTNLNLSNKILFQFQD 163


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
            protein Y11D7A.14 protein.
          Length = 1464

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +2

Query: 296  MSKFDKVPLPYEKLTKNLEVVKKRLGRELTLSEKIL 403
            +++FD + L     T+ +E  K++L  ELT +++I+
Sbjct: 1037 IARFDNIALNERNSTRKIEREKEKLNEELTTAKEII 1072


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,638,308
Number of Sequences: 27780
Number of extensions: 342050
Number of successful extensions: 869
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)