Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4779
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    27   2.1  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    26   4.7  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    26   4.7  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   8.3  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    25   8.3  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    25   8.3  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 693 PPCIDNPQCRGSWSP 649
           PP I NP  RG WSP
Sbjct: 337 PPMIRNPNYRGPWSP 351


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +1

Query: 151 SGLVGQNTEPTNPFLPNSRFQCTSALHARGGVSSSLDISPEREVTI 288
           +G    +  P+   LP+   +  + L A G   SS+D+S E + ++
Sbjct: 470 TGYGSMSQSPSRSDLPSKISRVNAELQAHGSQRSSIDVSKENKSSV 515


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 147 MLGTRWTEHRANESIFTELKIPMHLSTTCARRSFEF 254
           M+G     +R+ E +   LK+ M LS  CA+ S  F
Sbjct: 383 MIGLPRQPNRSYEIMLQHLKVSMELSNPCAKTSSIF 418


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 90  CKHLNNVPYVFLYLMC 137
           C  LNN  Y FL+L+C
Sbjct: 194 CVGLNNARYFFLFLLC 209


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 605 RNWQEWRKRKEKV 643
           RNW+EW K K K+
Sbjct: 242 RNWEEWIKHKYKI 254


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 31  LIELRSFEEIFTLYIRPVICANILIMYLMSF 123
           +IEL   E++ +L+   +IC ++ I YLM F
Sbjct: 352 IIELH-MEKVKSLHSLSIICLDMAISYLMEF 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,820
Number of Sequences: 5004
Number of extensions: 66658
Number of successful extensions: 199
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)