Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4779
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0212 - 14919074-14919433,14919444-14920514 31 0.70
03_01_0557 + 4143339-4143600,4143674-4144704 30 2.1
06_01_0251 - 1890143-1891180 29 2.8
03_02_0768 + 11015855-11016063,11016285-11016359,11018296-110188... 28 6.5
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965... 28 6.5
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 28 8.6
06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250... 28 8.6
01_06_1156 + 34974727-34974833,34975110-34975217,34978124-34978706 28 8.6
>11_04_0212 - 14919074-14919433,14919444-14920514
Length = 476
Score = 31.5 bits (68), Expect = 0.70
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +3
Query: 228 TCARRSFEFFGHIARKRGDNLEKLLVTGKVCGRMPRGRNPIRWSDQIRSTLNTSVHVAIH 407
TCA + +IA + G + +LVTG + PRG RW+ + S + SV A
Sbjct: 239 TCAEMEGPYIDYIAAEHG---KPVLVTGPIVPEPPRGELEERWATWLSSFPDNSVVFASF 295
Query: 408 TAE 416
+E
Sbjct: 296 GSE 298
>03_01_0557 + 4143339-4143600,4143674-4144704
Length = 430
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 542 EQCFAESTTGSETRPTGEDPARNWQEWRKR 631
E C+ + T G+ + T + +W++WRKR
Sbjct: 265 EYCYTDETNGNGWKATTWNRLPSWKDWRKR 294
>06_01_0251 - 1890143-1891180
Length = 345
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Frame = -2
Query: 436 EKKTWLSSAVWIATWTEVLRVERIWSDQRIG----FLP-LGILPHTLPVTSSFSRLS 281
+K++W++S W+ TW +W+ G LP G T P SF LS
Sbjct: 51 DKRSWVTSHGWVLTWDPTTLATFLWNPHAAGRRRIVLPSFGQTTTTPPPADSFCALS 107
>03_02_0768 +
11015855-11016063,11016285-11016359,11018296-11018833,
11019356-11020465
Length = 643
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 534 PSKSSASQSLPPDRKRDPLGKIRRETGR 617
P +S+ + PPD+ RD G R TGR
Sbjct: 186 PRRSARTAERPPDKPRDEDGDSSRRTGR 213
>03_02_0584 -
9650996-9651488,9651630-9652049,9652129-9652158,
9652201-9652287,9652657-9653669,9653832-9654854,
9654946-9654969
Length = 1029
Score = 28.3 bits (60), Expect = 6.5
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = -2
Query: 433 KKTWLSSAVWIATWTEVLRVER 368
K+ W+SS++W TW +++ +R
Sbjct: 717 KRDWVSSSIWNETWERLMQSKR 738
>08_02_1073 -
24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 531 DPSKSSASQSLPPDRKRDPLGKIRRETGR 617
+P + S LPP D + K RR TGR
Sbjct: 205 EPPRKSTRHELPPRLSNDRVDKRRRSTGR 233
>06_03_1208 -
28422941-28423139,28423854-28424434,28424705-28425078,
28425235-28425339,28425902-28425970,28426084-28426156,
28426395-28426478,28426616-28426648,28426731-28426790,
28427535-28427627,28427851-28427970,28428804-28428886,
28428887-28429007,28429114-28429164,28429245-28429333,
28429429-28429561,28430220-28430354,28430581-28430952,
28431679-28431796,28431883-28431998,28432131-28432442
Length = 1106
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +2
Query: 155 DSLDRT---QSQRIHFYRTQDSNAPQHYMRAEEFRVLWTYRQKER*QSGKAAGNRQGMRE 325
DSLDR S R H T D N ++Y + + T+R + R + G++
Sbjct: 278 DSLDRNATKSSSRTHSTLT-DPNFVENYFKYSRLHFIGTWRNRYRKRFSNLLGDKSSKGN 336
Query: 326 NAQRQKSNSLV 358
K+N+++
Sbjct: 337 RDHSGKNNTII 347
>01_06_1156 + 34974727-34974833,34975110-34975217,34978124-34978706
Length = 265
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 539 QEQCFAESTTGSETRPTGEDPARNWQEWRKRKEKVIRGDHDPR 667
QE + G+ T T P + +WRK +K+IRG+ PR
Sbjct: 31 QENAMKKVCIGTRTEYTYA-PYHDGYQWRKYGQKMIRGNSFPR 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,686,547
Number of Sequences: 37544
Number of extensions: 466984
Number of successful extensions: 1497
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1497
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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