Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4779
         (722 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-380|ABC65863.1|  264|Drosophila melanogaster CG34049-PA...    30   2.8  
AY052030-1|AAK93454.1| 1422|Drosophila melanogaster LD47893p pro...    29   4.8  
AF104401-1|AAF14115.1| 1827|Drosophila melanogaster SPT6 protein...    29   4.8  
AF104400-1|AAF14114.1| 1831|Drosophila melanogaster SPT6 protein...    29   4.8  
AE014298-861|AAF46140.1| 1831|Drosophila melanogaster CG12225-PA...    29   4.8  
X64461-1|CAA45791.1|  406|Drosophila melanogaster calreticulin p...    29   6.4  
BT001670-1|AAN71425.1|  406|Drosophila melanogaster RE50082p pro...    29   6.4  
AE014297-990|AAF54416.1|  406|Drosophila melanogaster CG9429-PA ...    29   6.4  

>AE014134-380|ABC65863.1|  264|Drosophila melanogaster CG34049-PA
           protein.
          Length = 264

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = -1

Query: 329 HSPAYLACYQQLFQIVTSLSGDMSKELETPPRACSAEVHWNLEFGKNGF-VGSVFCPTSP 153
           +S  YLAC  Q  Q + S+     K   TP R+ + E  W+   GK      +  C TS 
Sbjct: 55  NSRNYLACEVQRSQSINSIKSLPVKFPSTPNRSLNTEKDWS--HGKRCLQCAAPKCKTSS 112

Query: 152 EHFPLAH*IKKDIRYIIKMF 93
                +  +KKD + ++K F
Sbjct: 113 RSSIQSKKLKKDKKSLLKEF 132


>AY052030-1|AAK93454.1| 1422|Drosophila melanogaster LD47893p
           protein.
          Length = 1422

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 311 QGMRENAQRQK-SNSLVGPNTLDSQYLSPR 397
           + +R+N QR + +   +GP  L  QYLSPR
Sbjct: 144 ENLRDNYQRNEITQESIGPTELAKQYLSPR 173


>AF104401-1|AAF14115.1| 1827|Drosophila melanogaster SPT6 protein
           protein.
          Length = 1827

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 311 QGMRENAQRQK-SNSLVGPNTLDSQYLSPR 397
           + +R+N QR + +   +GP  L  QYLSPR
Sbjct: 549 ENLRDNYQRNEITQESIGPTELAKQYLSPR 578


>AF104400-1|AAF14114.1| 1831|Drosophila melanogaster SPT6 protein
           protein.
          Length = 1831

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 311 QGMRENAQRQK-SNSLVGPNTLDSQYLSPR 397
           + +R+N QR + +   +GP  L  QYLSPR
Sbjct: 553 ENLRDNYQRNEITQESIGPTELAKQYLSPR 582


>AE014298-861|AAF46140.1| 1831|Drosophila melanogaster CG12225-PA
           protein.
          Length = 1831

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 311 QGMRENAQRQK-SNSLVGPNTLDSQYLSPR 397
           + +R+N QR + +   +GP  L  QYLSPR
Sbjct: 553 ENLRDNYQRNEITQESIGPTELAKQYLSPR 582


>X64461-1|CAA45791.1|  406|Drosophila melanogaster calreticulin
           protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 693 PPCIDNPQCRGSWSP 649
           PP IDNP+ +G W P
Sbjct: 263 PPMIDNPEFKGEWQP 277


>BT001670-1|AAN71425.1|  406|Drosophila melanogaster RE50082p
           protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 693 PPCIDNPQCRGSWSP 649
           PP IDNP+ +G W P
Sbjct: 263 PPMIDNPEFKGEWQP 277


>AE014297-990|AAF54416.1|  406|Drosophila melanogaster CG9429-PA
           protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 693 PPCIDNPQCRGSWSP 649
           PP IDNP+ +G W P
Sbjct: 263 PPMIDNPEFKGEWQP 277


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,739,444
Number of Sequences: 53049
Number of extensions: 752293
Number of successful extensions: 2163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2162
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3231892257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)