Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4779
(722 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 37 0.013
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 37 0.013
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 37 0.013
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 37 0.013
AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical ... 33 0.21
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z46676-2|CAA86662.1| 507|Caenorhabditis elegans Hypothetical pr... 29 2.5
X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin pr... 29 3.4
AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin ... 29 3.4
Z81495-11|CAN99657.1| 339|Caenorhabditis elegans Hypothetical p... 28 5.9
Z81495-10|CAD57692.1| 480|Caenorhabditis elegans Hypothetical p... 28 5.9
Z81495-9|CAB04064.1| 389|Caenorhabditis elegans Hypothetical pr... 28 5.9
AL032644-11|CAN99705.1| 339|Caenorhabditis elegans Hypothetical... 28 5.9
AL032644-10|CAD57710.1| 480|Caenorhabditis elegans Hypothetical... 28 5.9
AL032644-9|CAA21673.1| 389|Caenorhabditis elegans Hypothetical ... 28 5.9
AC084268-3|AAK19005.5| 397|Caenorhabditis elegans Hypothetical ... 28 7.8
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 237 RRSFEFFGHIARKRGDNLEKLLVTGKVCG-RMPRGRNPIRWSDQIRSTLNT 386
+R + GH+AR++ L+ + G + P GR P+RW+D +R + T
Sbjct: 809 KRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITT 859
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 237 RRSFEFFGHIARKRGDNLEKLLVTGKVCG-RMPRGRNPIRWSDQIRSTLNT 386
+R + GH+AR++ L+ + G + P GR P+RW+D +R + T
Sbjct: 984 KRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITT 1034
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 237 RRSFEFFGHIARKRGDNLEKLLVTGKVCG-RMPRGRNPIRWSDQIRSTLNT 386
+R + GH+AR++ L+ + G + P GR P+RW+D +R + T
Sbjct: 723 KRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITT 773
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 237 RRSFEFFGHIARKRGDNLEKLLVTGKVCG-RMPRGRNPIRWSDQIRSTLNT 386
+R + GH+AR++ L+ + G + P GR P+RW+D +R + T
Sbjct: 335 KRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITT 385
>AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical
protein Y51F10.8 protein.
Length = 204
Score = 33.1 bits (72), Expect = 0.21
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Frame = +3
Query: 141 RKMLGTRWTEHRANESIFTELKIPMHLSTTCA---RRSFEFFGHIARKRGDNLEKLLVTG 311
RK++G TE R E++ L +R + GH+AR+ L+
Sbjct: 85 RKLVGLTLTEQRERNIHREEVREKSKLRDPLIHIKKRKLGWAGHVARRTDGRWTTLM--N 142
Query: 312 KVCGR---MPRGRNPIRWSDQIRSTLNT 386
C R P GR P+RW+D +R + T
Sbjct: 143 DWCPRDEKRPVGRPPMRWNDSLRKEVTT 170
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = +2
Query: 134 VLEENARDSLDRTQSQRIHFYRTQDSNAPQHYMRAEEFRVLWTYRQKER*QSGK-AAGNR 310
+++ + Q+Q++H + PQ M+ + ++Q ++ Q+G+ +
Sbjct: 94 MMQPQQMQQAQQQQAQQMHQMQIHHQQHPQ-MMQQHAQQGYHPHQQNQQHQAGQHQQSHH 152
Query: 311 QGMRENAQRQKSNSLVGPNTLDSQYLSPRC 400
Q N R + S GP+ + + PRC
Sbjct: 153 QSQNHNQHRNHNQSHSGPHHIPQNLMMPRC 182
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = +2
Query: 134 VLEENARDSLDRTQSQRIHFYRTQDSNAPQHYMRAEEFRVLWTYRQKER*QSGK-AAGNR 310
+++ + Q+Q++H + PQ M+ + ++Q ++ Q+G+ +
Sbjct: 218 MMQPQQMQQAQQQQAQQMHQMQIHHQQHPQ-MMQQHAQQGYHPHQQNQQHQAGQHQQSHH 276
Query: 311 QGMRENAQRQKSNSLVGPNTLDSQYLSPRC 400
Q N R + S GP+ + + PRC
Sbjct: 277 QSQNHNQHRNHNQSHSGPHHIPQNLMMPRC 306
>Z46676-2|CAA86662.1| 507|Caenorhabditis elegans Hypothetical
protein C08B11.2 protein.
Length = 507
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 539 QEQCFAESTTGSETRPTGEDPARNWQEW 622
+E+CF E + + P G+DP R Q W
Sbjct: 443 EEECFVEEDSKPPSFPPGQDPRRIGQYW 470
>X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin
protein.
Length = 395
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 693 PPCIDNPQCRGSWSP 649
PP IDNP+ +G W P
Sbjct: 258 PPMIDNPEYKGEWKP 272
>AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin
protein 1 protein.
Length = 395
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 693 PPCIDNPQCRGSWSP 649
PP IDNP+ +G W P
Sbjct: 258 PPMIDNPEYKGEWKP 272
>Z81495-11|CAN99657.1| 339|Caenorhabditis elegans Hypothetical
protein Y51H1A.1c protein.
Length = 339
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 298 CW*QARYAGECPEAEIQFAGRTKYARLSIPQSTLLSTQP 414
CW R +G+CP+ + T+ A++ P +TLL QP
Sbjct: 304 CW---RTSGDCPKCVRRQNFETRRAQVDDPHNTLLVLQP 339
>Z81495-10|CAD57692.1| 480|Caenorhabditis elegans Hypothetical
protein Y51H1A.1b protein.
Length = 480
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 298 CW*QARYAGECPEAEIQFAGRTKYARLSIPQSTLLSTQP 414
CW R +G+CP+ + T+ A++ P +TLL QP
Sbjct: 445 CW---RTSGDCPKCVRRQNFETRRAQVDDPHNTLLVLQP 480
>Z81495-9|CAB04064.1| 389|Caenorhabditis elegans Hypothetical
protein Y51H1A.1a protein.
Length = 389
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 298 CW*QARYAGECPEAEIQFAGRTKYARLSIPQSTLLSTQP 414
CW R +G+CP+ + T+ A++ P +TLL QP
Sbjct: 354 CW---RTSGDCPKCVRRQNFETRRAQVDDPHNTLLVLQP 389
>AL032644-11|CAN99705.1| 339|Caenorhabditis elegans Hypothetical
protein Y51H1A.1c protein.
Length = 339
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 298 CW*QARYAGECPEAEIQFAGRTKYARLSIPQSTLLSTQP 414
CW R +G+CP+ + T+ A++ P +TLL QP
Sbjct: 304 CW---RTSGDCPKCVRRQNFETRRAQVDDPHNTLLVLQP 339
>AL032644-10|CAD57710.1| 480|Caenorhabditis elegans Hypothetical
protein Y51H1A.1b protein.
Length = 480
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 298 CW*QARYAGECPEAEIQFAGRTKYARLSIPQSTLLSTQP 414
CW R +G+CP+ + T+ A++ P +TLL QP
Sbjct: 445 CW---RTSGDCPKCVRRQNFETRRAQVDDPHNTLLVLQP 480
>AL032644-9|CAA21673.1| 389|Caenorhabditis elegans Hypothetical
protein Y51H1A.1a protein.
Length = 389
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 298 CW*QARYAGECPEAEIQFAGRTKYARLSIPQSTLLSTQP 414
CW R +G+CP+ + T+ A++ P +TLL QP
Sbjct: 354 CW---RTSGDCPKCVRRQNFETRRAQVDDPHNTLLVLQP 389
>AC084268-3|AAK19005.5| 397|Caenorhabditis elegans Hypothetical
protein Y92H12BL.4 protein.
Length = 397
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 50 LKKYLLCIFDL*FVQTS**CTLCLSLFNVLEENARDSLDRTQSQRIHFYR 199
L K+L IFDL V TS C+ + + + SL Q +IH +R
Sbjct: 162 LNKHLDPIFDLPEVSTSYFSQQCIKRLSKVIARLKPSLSTIQETKIHIFR 211
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,189,022
Number of Sequences: 27780
Number of extensions: 378908
Number of successful extensions: 1079
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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