Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4777
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal...   263   2e-71
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    29   0.75 
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    27   3.0  
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    27   3.0  

>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
           catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score =  263 bits (644), Expect = 2e-71
 Identities = 121/184 (65%), Positives = 149/184 (80%)
 Frame = +2

Query: 2   QVGVDYEVIIIDDGSPDGTSEVARQLQKLYGSSKIVLRPREMKLGLGTAYIHGIQQASGN 181
           Q  +D+E++IIDD SPDGT EVA++LQK+YG  KI+L+PR  KLGLGTAYIHG++ A+G+
Sbjct: 30  QEKLDWEIVIIDDASPDGTQEVAKELQKIYGEDKILLKPRSGKLGLGTAYIHGLKFATGD 89

Query: 182 FIIIMDADLSHHPKFIPEFIKLQLKYDYHIVSGTRYKGSGGVYGWDFKRKLISRGANFLT 361
           F+IIMDAD SHHPK++PEFIKLQ +++Y IV GTRY   GGVYGW+ KRK ISRGAN L 
Sbjct: 90  FVIIMDADFSHHPKYLPEFIKLQKEHNYDIVLGTRYAKDGGVYGWNLKRKFISRGANLLA 149

Query: 362 QLMLRPGVSDLTGSFRLYKKEVLEKLILSCVSKGYVFPMEMIIRARQFDYSIGEGPISFV 541
             +L  GVSD+TGSFRLYKK VLE L+    SKGYVF ME+I RAR+ +Y+IGE PI+FV
Sbjct: 150 STVLGTGVSDVTGSFRLYKKPVLETLMSEVTSKGYVFQMEIIARAREHNYTIGEVPIAFV 209

Query: 542 DRGY 553
           DR Y
Sbjct: 210 DRLY 213


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 127 EAWSRNCLHSWDTASFWKFYY 189
           E +++NC   WD++ FWK ++
Sbjct: 41  EKYAKNCNTIWDSSKFWKQFF 61


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = +1

Query: 52  WDFRSGASAAEALWLL*NSASTSRDEAWSRNCLHSWDTASF-WKFYYYNGCGFEPSSKVH 228
           W++    S  E  WL   S S   D     N + S++  SF W ++  N   F    +  
Sbjct: 279 WNYWFTISTEEKTWL---SQSVDAD----MNPVFSFEHLSFIWNYFDANSNAFSWLLRFD 331

Query: 229 SRVHQTPIKI*LPYCLWYSLQGEWW 303
           S+V     +  L   LW SL  + W
Sbjct: 332 SQVRMEQFQELLMRALWESLNQQRW 356


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 20/88 (22%), Positives = 39/88 (44%)
 Frame = +2

Query: 53  GTSEVARQLQKLYGSSKIVLRPREMKLGLGTAYIHGIQQASGNFIIIMDADLSHHPKFIP 232
           G  +V+     +Y + K     +++    G   I  I +A GN  +++  D    PK   
Sbjct: 349 GADKVSIGSDAVYAAEKYYENGKKLS---GKTAIETISKAYGNQAVVISVD----PK--R 399

Query: 233 EFIKLQLKYDYHIVSGTRYKGSGGVYGW 316
           +++K+     +H+V  +R   +G  Y W
Sbjct: 400 QYVKVPEDTKHHVVKTSRLGPNGEAYCW 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,685
Number of Sequences: 5004
Number of extensions: 55930
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)