Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4777
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0508 + 34417540-34417649,34418239-34418338,34418445-344184... 233 1e-61
03_06_0489 - 34284301-34284336,34285104-34285227,34285307-342853... 42 6e-04
06_03_1488 + 30484904-30485134,30485239-30487159,30487255-304876... 30 1.4
03_02_0565 - 9484045-9484335,9484621-9484686,9484790-9484867,948... 30 1.8
05_03_0553 - 15389376-15389499,15391167-15391576 28 5.5
11_01_0121 - 948450-948904,949073-949224,949389-949449,950201-95... 28 7.2
12_01_0219 - 1651833-1651987,1652172-1652471,1652889-1652967,165... 27 9.6
11_01_0217 - 1698721-1698875,1699122-1699421,1699840-1699918,169... 27 9.6
10_01_0318 + 3493913-3496976,3497064-3497392 27 9.6
03_01_0009 - 89127-89924,90090-90518,90582-90716,91102-91382,916... 27 9.6
>03_06_0508 +
34417540-34417649,34418239-34418338,34418445-34418478,
34418559-34418635,34418929-34419005,34419060-34419224,
34419306-34419420,34419546-34419650
Length = 260
Score = 233 bits (569), Expect = 1e-61
Identities = 120/223 (53%), Positives = 159/223 (71%), Gaps = 17/223 (7%)
Frame = +2
Query: 11 VDYEVIIIDDGSPDGTSEVARQLQKLYGSSKIVLRPREMKLGLGTAYIHGIQQASGNFII 190
V++E+I++DDGSPDGT ++ +QLQ++YG ++++LR R KLGLGTAY+HG++ ASG+F++
Sbjct: 39 VNFEIIVVDDGSPDGTQDIVKQLQQIYGENRVLLRARPRKLGLGTAYLHGLKHASGDFVV 98
Query: 191 IMDADLSHHPKFIPEFIK---LQL-KYD-YH------------IVSGTRYKGSGGVYGWD 319
IMDADLSHH I E ++ LQL Y Y+ +V+GTRY +GGV+GW+
Sbjct: 99 IMDADLSHHMLEISETLEQSPLQLDSYQGYYTDKKKQKETGADVVTGTRYVQNGGVHGWN 158
Query: 320 FKRKLISRGANFLTQLMLRPGVSDLTGSFRLYKKEVLEKLILSCVSKGYVFPMEMIIRAR 499
RKL SRGAN L Q +L+PG SDLTGSFRLYK+ VLE LI SCVSKGYVF MEMI+RA
Sbjct: 159 LMRKLTSRGANVLAQTLLQPGASDLTGSFRLYKRNVLEDLISSCVSKGYVFQMEMIVRAT 218
Query: 500 QFDYSIGEGPISFVDRGYRRVLNSGDREIVQFSKALLFLFAPT 628
+ Y I E PI+FVDR + G EIV++ K L++L T
Sbjct: 219 RKGYHIEEVPITFVDRVF-GTSKLGGSEIVEYLKGLVYLLLTT 260
>03_06_0489 -
34284301-34284336,34285104-34285227,34285307-34285371,
34285472-34285555,34285661-34285789,34285887-34285976,
34286116-34286250,34286939-34286984,34287119-34287225,
34287355-34287412,34287524-34287765
Length = 371
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = +2
Query: 17 YEVIIIDDGSPDGTSEVARQLQKLYGSSKIVLRPREMKLGLGTAYIHGIQQASGNFIIIM 196
YEV+I+DDGS D TS+VA + + + + + G G A G+ + G ++++
Sbjct: 150 YEVLIVDDGSTDHTSKVAFEFVRKHKIDNVRVLLLGRNHGKGEAVRKGMLHSRGELLLML 209
Query: 197 DAD 205
DAD
Sbjct: 210 DAD 212
>06_03_1488 +
30484904-30485134,30485239-30487159,30487255-30487691,
30487777-30487983
Length = 931
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 169 LLYPMNVGSSETKLHLARSKHYFRGAIELLQLT 71
+L P V + T LHL++S YFR +E +++T
Sbjct: 637 ILSPFIVAQASTVLHLSKSNLYFRPDLERIRIT 669
>03_02_0565 -
9484045-9484335,9484621-9484686,9484790-9484867,
9485005-9485157,9485271-9485356,9485445-9485551,
9485685-9485752,9485890-9485912,9487627-9487732,
9487772-9487899,9487989-9488065,9488126-9488131,
9488206-9488264
Length = 415
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +2
Query: 185 IIIMDADLSHHPKFIPEFIKLQLKYDYHIVSGTRYKGSGGVYG 313
+I D DL HH F P LQ + S Y G +YG
Sbjct: 156 MIAADYDLFHHMSFSPSLQNLQSPTFFTTRSSESYLGESSIYG 198
>05_03_0553 - 15389376-15389499,15391167-15391576
Length = 177
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = -2
Query: 364 LSQKVSSPRYELTLEVPAVDSTTPLVTSTRDNMVIIF*LEFDELWNELWMMAQIRIHYNN 185
L Q+V SP E + + + +PL+ S + F L +++W +LW++AQ + HY +
Sbjct: 39 LQQQVLSPYNEFVRQQYGI-TASPLLQS------VAFQLRNNQVWQQLWLVAQ-QSHYED 90
>11_01_0121 -
948450-948904,949073-949224,949389-949449,950201-950336,
951042-951376,952523-952577
Length = 397
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 467 VFPMEMIIRARQFDYSIGEGPISFVDRGY 553
+F +E I R+ + DY +GEG V +GY
Sbjct: 71 LFELETITRSFRADYVLGEGGFGTVYKGY 99
>12_01_0219 -
1651833-1651987,1652172-1652471,1652889-1652967,
1653047-1653111,1653236-1653288,1653666-1654084
Length = 356
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 511 FNWRGAYLICGSWLPESLKLGGS 579
FNW G CGSW+ + ++ S
Sbjct: 327 FNWSGIQCNCGSWITPAFQISKS 349
>11_01_0217 -
1698721-1698875,1699122-1699421,1699840-1699918,
1699998-1700062,1700187-1700239,1700654-1701072
Length = 356
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 511 FNWRGAYLICGSWLPESLKLGGS 579
FNW G CGSW+ + ++ S
Sbjct: 327 FNWSGIQCNCGSWITPAFQISKS 349
>10_01_0318 + 3493913-3496976,3497064-3497392
Length = 1130
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -2
Query: 193 YNNKISRSLLYPMNVGSSETKLHLARSKHYFRGAI 89
YNN + L + + ++ LH+ ++++FRGAI
Sbjct: 449 YNNNFTGELPQELGLNTTPGLLHIDLTRNHFRGAI 483
>03_01_0009 -
89127-89924,90090-90518,90582-90716,91102-91382,
91634-91809,91899-92011,92157-92278,92375-92594
Length = 757
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +1
Query: 409 IVQKGSSREAYSKLRF*RICLPNGNDYQSEAI*LFNWRGAYLICGSWLPESLKLGGSGNS 588
++Q +SR+A KLR ++ + GN Y + F W S+ ++LK+G N
Sbjct: 408 MLQVKASRDADKKLRLEKLFVLQGNSYST-----FTWEEIDNATSSF-ADNLKIGSGANG 461
Query: 589 PILK 600
+ K
Sbjct: 462 TVYK 465
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,217,602
Number of Sequences: 37544
Number of extensions: 361714
Number of successful extensions: 846
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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