Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4777
(641 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125462-6|AAD12857.2| 239|Caenorhabditis elegans Hypothetical ... 273 6e-74
AF125965-1|AAL38962.1| 339|Caenorhabditis elegans Hypothetical ... 43 2e-04
Z22179-6|CAA80163.2| 165|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z75537-2|CAA99835.1| 622|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z71259-6|CAA95792.1| 328|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z46794-1|CAA86782.1| 367|Caenorhabditis elegans Hypothetical pr... 28 6.5
Y10114-1|CAA71200.1| 367|Caenorhabditis elegans histone RNA hai... 28 6.5
AB060649-1|BAB83255.1| 367|Caenorhabditis elegans histone stem-... 28 6.5
AL117200-5|CAB55057.1| 293|Caenorhabditis elegans Hypothetical ... 27 8.6
>AF125462-6|AAD12857.2| 239|Caenorhabditis elegans Hypothetical
protein Y66H1A.2 protein.
Length = 239
Score = 273 bits (670), Expect = 6e-74
Identities = 132/204 (64%), Positives = 155/204 (75%)
Frame = +2
Query: 11 VDYEVIIIDDGSPDGTSEVARQLQKLYGSSKIVLRPREMKLGLGTAYIHGIQQASGNFII 190
V +EVII+DD SPDGT +A+ LQK YG KI+++PR KLGLGTAY HG+ A G FII
Sbjct: 34 VSHEVIIVDDASPDGTQGIAKLLQKEYGDDKILIKPRVGKLGLGTAYSHGLSFARGEFII 93
Query: 191 IMDADLSHHPKFIPEFIKLQLKYDYHIVSGTRYKGSGGVYGWDFKRKLISRGANFLTQLM 370
+MDADLSHHPKFIPE I LQ KY IV+GTRYK GGV GWD KRK IS+GANFL Q +
Sbjct: 94 LMDADLSHHPKFIPEMIALQHKYKLDIVTGTRYKDGGGVSGWDLKRKTISKGANFLAQFL 153
Query: 371 LRPGVSDLTGSFRLYKKEVLEKLILSCVSKGYVFPMEMIIRARQFDYSIGEGPISFVDRG 550
L PGVSDLTGSFRLYK+++L KLI VSKGYVF MEM+ RA++ Y IGE PISFVDR
Sbjct: 154 LNPGVSDLTGSFRLYKRDILSKLIAESVSKGYVFQMEMMFRAKKSGYRIGEVPISFVDRF 213
Query: 551 YRRVLNSGDREIVQFSKALLFLFA 622
+ G +EIV ++K LL+LFA
Sbjct: 214 FGE-SKLGSQEIVDYAKGLLYLFA 236
>AF125965-1|AAL38962.1| 339|Caenorhabditis elegans Hypothetical
protein H43I07.3 protein.
Length = 339
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +2
Query: 17 YEVIIIDDGSPDGTSEVARQLQKLYGSSKIVLRPREMKL--GLGTAYIHGIQQASGNFII 190
YE+I++DDGS D T+++ Q+ G+ + LR +MK G G A G+ +SG I+
Sbjct: 119 YEIIVVDDGSTDETADIVVQI----GARRQNLRVLKMKANRGKGGAVKMGVLHSSGKLIL 174
Query: 191 IMDAD 205
DAD
Sbjct: 175 FADAD 179
>Z22179-6|CAA80163.2| 165|Caenorhabditis elegans Hypothetical
protein F58A4.6 protein.
Length = 165
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = -2
Query: 226 ELWMMAQIRIHYNNKISRSLLYPMNVGSSETKLHLA---RSKHYFRGAIELLQL 74
E + AQIR YN + + LL + V + L A R KH+FR ++L +L
Sbjct: 39 EEYSFAQIRAFYNIPVDKKLLVNIQVKNPAQNLDYAWERRLKHHFRYMLDLEKL 92
>Z75537-2|CAA99835.1| 622|Caenorhabditis elegans Hypothetical
protein F18E2.2 protein.
Length = 622
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 380 GVSDLTGSFRLYKKEVLEKLILSCVSK 460
G+ ++ G F YKKEVL+ L + VSK
Sbjct: 595 GIDEIDGDFEDYKKEVLDALGEALVSK 621
>Z71259-6|CAA95792.1| 328|Caenorhabditis elegans Hypothetical
protein F13G3.6 protein.
Length = 328
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = +2
Query: 20 EVIIIDDGSPDGTSEVARQLQKLYGSS--KIVLRPREMKLGLGTAYIHGIQQASGNFIII 193
E+ + DDGS D T + + + +V+ G+G A ++ + G ++
Sbjct: 40 EICLADDGSVDDTVRILENARLEFEEMGMNVVVTHVPQPGGVGAAKDCAVRSSKGRYLCF 99
Query: 194 MDADLSHHPKFIPEFIKLQLK 256
DAD P I ++L K
Sbjct: 100 NDADDVSSPNRIKSQLELATK 120
>Z46794-1|CAA86782.1| 367|Caenorhabditis elegans Hypothetical
protein R06F6.1 protein.
Length = 367
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 154 SWDTA-SFWKFYYYNGCGFEPSSKVHS 231
SWDT WK Y CG EPS V++
Sbjct: 259 SWDTQIKKWKRSLYEYCGEEPSDSVNT 285
>Y10114-1|CAA71200.1| 367|Caenorhabditis elegans histone RNA
hairpin-binding protein protein.
Length = 367
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 154 SWDTA-SFWKFYYYNGCGFEPSSKVHS 231
SWDT WK Y CG EPS V++
Sbjct: 259 SWDTQIKKWKRSLYEYCGEEPSDSVNT 285
>AB060649-1|BAB83255.1| 367|Caenorhabditis elegans histone
stem-loop binding proteinCDL-1 protein.
Length = 367
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 154 SWDTA-SFWKFYYYNGCGFEPSSKVHS 231
SWDT WK Y CG EPS V++
Sbjct: 259 SWDTQIKKWKRSLYEYCGEEPSDSVNT 285
>AL117200-5|CAB55057.1| 293|Caenorhabditis elegans Hypothetical
protein Y50E8A.9 protein.
Length = 293
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 554 GSHDPQMR*APLQLNNQIASL 492
G H PQ+R P+ L NQ+AS+
Sbjct: 24 GGHMPQVRSTPIVLPNQVASM 44
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,505,436
Number of Sequences: 27780
Number of extensions: 300768
Number of successful extensions: 607
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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