Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4775
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1577 + 27985066-27985434,27985520-27985594,27986159-279863...    44   1e-04
02_03_0272 - 17146578-17146691,17146806-17146926,17147260-171473...    43   3e-04
11_05_0029 - 18481995-18482235,18483263-18483606,18483653-18483805     29   4.5  
02_02_0138 + 7114949-7115656,7116388-7116435,7116830-7117988,711...    29   4.5  
01_01_0245 + 2013821-2014171,2014278-2014671,2015158-2015289,201...    29   4.5  
08_01_0844 - 8283858-8284409,8284883-8284963                           28   5.9  
02_05_0797 - 31805956-31806902,31806992-31807505                       28   7.8  

>08_02_1577 +
           27985066-27985434,27985520-27985594,27986159-27986320,
           27986415-27986590,27986681-27986756,27987154-27987282,
           27987363-27987482,27987734-27987815,27988016-27988110,
           27988427-27988491,27988604-27988802,27989426-27989620,
           27989866-27989960,27990059-27990194,27990265-27990482,
           27990729-27990856,27991148-27991617
          Length = 929

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = +2

Query: 2   EQEYQDIAVRLGTDREYLKAIRAKVWTARTDSPLFDCKAYATGLEMLYNRMWSRHARGDR 181
           E EY  +A+ L  D   L+ +R  +      SP+ D + +  GLE  Y  MW R+  GD 
Sbjct: 783 ENEYVSLALDLAADVTALQELRMSLRGLMAKSPVCDGENFTRGLESAYRNMWRRYCDGDA 842

Query: 182 P 184
           P
Sbjct: 843 P 843


>02_03_0272 - 17146578-17146691,17146806-17146926,17147260-17147365,
            17147469-17147551,17147688-17147815,17147897-17147983,
            17148064-17148174,17148502-17148669,17148753-17148837,
            17148921-17149037,17149127-17149203,17149299-17149370,
            17150538-17150634,17150750-17150952,17151115-17151217,
            17151324-17151391,17151461-17151514,17151595-17151704,
            17151982-17152060,17152171-17152233,17153410-17153529,
            17153913-17153969,17154071-17154187,17156426-17156476,
            17156591-17156689,17156787-17156935,17158090-17158312
          Length = 953

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = +2

Query: 5    QEYQDIAVRLGTDREYLKAIRAKVWTARTDSPLFDCKAYATGLEMLYNRMWSRHARGDRP 184
            +EY+D AV L  +   L+A+  K+   R   PLFD   +   LE  Y +MW+ +  G   
Sbjct: 878  KEYEDRAVDLALNPAKLQALTNKLKEVRMTCPLFDTARWVRNLERAYYKMWNLYCSGRHR 937

Query: 185  DHIQALE 205
            +  + +E
Sbjct: 938  EPFKVIE 944


>11_05_0029 - 18481995-18482235,18483263-18483606,18483653-18483805
          Length = 245

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 300 IILVFLASINLIFERQRIYGLSQTIFRDLLFLIQK 404
           +IL    +I+   E+ RI G+  T   DLLFL++K
Sbjct: 202 VILRIRQTIHNTIEKLRIAGIQATSAHDLLFLVEK 236


>02_02_0138 +
           7114949-7115656,7116388-7116435,7116830-7117988,
           7118336-7118424,7118697-7118732
          Length = 679

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 110 CKA-YATGLEMLYNRMWSRHARGDRPDHIQALE 205
           CK+ +A+    ++ RMW+ H +GDR   +  LE
Sbjct: 385 CKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLE 417


>01_01_0245 +
           2013821-2014171,2014278-2014671,2015158-2015289,
           2015747-2015788,2016096-2017057
          Length = 626

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 139 HLKSGGVRLAVEKRTVSASCPHLCSDRF*VFSICSQSYSYVLVFL 5
           HLK   + +A  + T+    P + S  F V S  S  YSY ++ L
Sbjct: 515 HLKDSAISMAEARGTIGFIAPEVFSRGFGVVSTKSDVYSYGMMLL 559


>08_01_0844 - 8283858-8284409,8284883-8284963
          Length = 210

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
 Frame = -1

Query: 342 AQRLN*LKPEKLVLSIVFSFRIKQN-----VPRNDFTLKRSSHNCIVFTYFSRAC 193
           +QRL+  +P+  +  ++ SF I  N     VPRN     R  ++C +F ++SR C
Sbjct: 6   SQRLS-AQPKLHIADLIASFGIPPNRQAPAVPRNG----RGPYDCSIFNFYSRRC 55


>02_05_0797 - 31805956-31806902,31806992-31807505
          Length = 486

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 79  DSSH*QSSFRLQGVRHRT*DAVQQNVVEARARRSP*SYT-GP 201
           DS   Q++   QG+   T DAV+ +VV+A  R  P  YT GP
Sbjct: 216 DSGEAQNARHAQGLILNTFDAVEHDVVDALRRIFPRVYTVGP 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,336,725
Number of Sequences: 37544
Number of extensions: 301663
Number of successful extensions: 633
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)