Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4775
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77412-1|AAB63465.1| 1151|Caenorhabditis elegans O-linked GlcNAc...    73   2e-13
U21320-2|ABC71824.1|  973|Caenorhabditis elegans O-linked glcnac...    73   2e-13
U21320-1|AAA62535.2| 1151|Caenorhabditis elegans O-linked glcnac...    73   2e-13
AY835433-1|AAX37360.1|  331|Caenorhabditis elegans bZIP transcri...    30   1.3  
AY835432-1|AAX37359.1|  467|Caenorhabditis elegans bZIP transcri...    30   1.3  
AF016440-2|AAB65905.2|  331|Caenorhabditis elegans Abnormal ever...    30   1.3  
AF016440-1|ABA54419.1|  467|Caenorhabditis elegans Abnormal ever...    30   1.3  
AL032656-3|CAD12890.1|  731|Caenorhabditis elegans Hypothetical ...    28   5.3  
AF416781-1|AAL38510.1|  731|Caenorhabditis elegans PH domain pro...    28   5.3  
AF324505-1|AAL49495.1|  731|Caenorhabditis elegans CED-12 protein.     28   5.3  
U61954-9|AAK29808.1|  286|Caenorhabditis elegans Fatty acid elon...    28   7.0  

>U77412-1|AAB63465.1| 1151|Caenorhabditis elegans O-linked GlcNAc
            transferase protein.
          Length = 1151

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 35/63 (55%), Positives = 41/63 (65%)
 Frame = +2

Query: 5    QEYQDIAVRLGTDREYLKAIRAKVWTARTDSPLFDCKAYATGLEMLYNRMWSRHARGDRP 184
            QEY  IAVRLGTD ++L  +RAKVW ART S LFD K Y   +E L  +MW R+  G   
Sbjct: 1079 QEYVSIAVRLGTDADHLANMRAKVWMARTSSTLFDVKQYCHDMEDLLGQMWKRYESGMPI 1138

Query: 185  DHI 193
            DHI
Sbjct: 1139 DHI 1141


>U21320-2|ABC71824.1|  973|Caenorhabditis elegans O-linked glcnac
            transferase protein1, isoform b protein.
          Length = 973

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 35/63 (55%), Positives = 41/63 (65%)
 Frame = +2

Query: 5    QEYQDIAVRLGTDREYLKAIRAKVWTARTDSPLFDCKAYATGLEMLYNRMWSRHARGDRP 184
            QEY  IAVRLGTD ++L  +RAKVW ART S LFD K Y   +E L  +MW R+  G   
Sbjct: 901  QEYVSIAVRLGTDADHLANMRAKVWMARTSSTLFDVKQYCHDMEDLLGQMWKRYESGMPI 960

Query: 185  DHI 193
            DHI
Sbjct: 961  DHI 963


>U21320-1|AAA62535.2| 1151|Caenorhabditis elegans O-linked glcnac
            transferase protein1, isoform a protein.
          Length = 1151

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 35/63 (55%), Positives = 41/63 (65%)
 Frame = +2

Query: 5    QEYQDIAVRLGTDREYLKAIRAKVWTARTDSPLFDCKAYATGLEMLYNRMWSRHARGDRP 184
            QEY  IAVRLGTD ++L  +RAKVW ART S LFD K Y   +E L  +MW R+  G   
Sbjct: 1079 QEYVSIAVRLGTDADHLANMRAKVWMARTSSTLFDVKQYCHDMEDLLGQMWKRYESGMPI 1138

Query: 185  DHI 193
            DHI
Sbjct: 1139 DHI 1141


>AY835433-1|AAX37360.1|  331|Caenorhabditis elegans bZIP
           transcription factor FOS-1b protein.
          Length = 331

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = -2

Query: 470 LHALSLVPILNRNSINSTLYHIFLY*EQEISENCLRQPINSLTLKD 333
           +H ++ +P+ + NS++    ++F   E++I +  L Q + SLT+ D
Sbjct: 196 IHVITSIPVSHANSLHGRSENVFAEPERKIPKIELDQTLTSLTMPD 241


>AY835432-1|AAX37359.1|  467|Caenorhabditis elegans bZIP
           transcription factor FOS-1a protein.
          Length = 467

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = -2

Query: 470 LHALSLVPILNRNSINSTLYHIFLY*EQEISENCLRQPINSLTLKD 333
           +H ++ +P+ + NS++    ++F   E++I +  L Q + SLT+ D
Sbjct: 332 IHVITSIPVSHANSLHGRSENVFAEPERKIPKIELDQTLTSLTMPD 377


>AF016440-2|AAB65905.2|  331|Caenorhabditis elegans Abnormal
           eversion of vulva protein5, isoform a protein.
          Length = 331

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = -2

Query: 470 LHALSLVPILNRNSINSTLYHIFLY*EQEISENCLRQPINSLTLKD 333
           +H ++ +P+ + NS++    ++F   E++I +  L Q + SLT+ D
Sbjct: 196 IHVITSIPVSHANSLHGRSENVFAEPERKIPKIELDQTLTSLTMPD 241


>AF016440-1|ABA54419.1|  467|Caenorhabditis elegans Abnormal
           eversion of vulva protein5, isoform b protein.
          Length = 467

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = -2

Query: 470 LHALSLVPILNRNSINSTLYHIFLY*EQEISENCLRQPINSLTLKD 333
           +H ++ +P+ + NS++    ++F   E++I +  L Q + SLT+ D
Sbjct: 332 IHVITSIPVSHANSLHGRSENVFAEPERKIPKIELDQTLTSLTMPD 377


>AL032656-3|CAD12890.1|  731|Caenorhabditis elegans Hypothetical
           protein Y106G6E.5 protein.
          Length = 731

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 66  EQRCGQLALTVLFSTARRTPPDLRCCTTE 152
           E RCG+LA   +   A ++P DLR   +E
Sbjct: 367 EHRCGRLAAISMVQFAEKSPQDLRMLISE 395


>AF416781-1|AAL38510.1|  731|Caenorhabditis elegans PH domain
           protein CED-12 protein.
          Length = 731

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 66  EQRCGQLALTVLFSTARRTPPDLRCCTTE 152
           E RCG+LA   +   A ++P DLR   +E
Sbjct: 367 EHRCGRLAAISMVQFAEKSPQDLRMLISE 395


>AF324505-1|AAL49495.1|  731|Caenorhabditis elegans CED-12 protein.
          Length = 731

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 66  EQRCGQLALTVLFSTARRTPPDLRCCTTE 152
           E RCG+LA   +   A ++P DLR   +E
Sbjct: 367 EHRCGRLAAISMVQFAEKSPQDLRMLISE 395


>U61954-9|AAK29808.1|  286|Caenorhabditis elegans Fatty acid
           elongation protein 5 protein.
          Length = 286

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 223 YCIHLFLEGLYMIRAIASRVPRPHSVVQ 140
           Y IH F+ G Y+++++  +VP P SV Q
Sbjct: 177 YIIHAFMYGYYLLKSL--KVPIPPSVAQ 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,865,380
Number of Sequences: 27780
Number of extensions: 294962
Number of successful extensions: 592
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)