Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4769
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   142   2e-35
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    54   1e-08
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    54   1e-08
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   4.1  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    25   5.4  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   5.4  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    25   7.2  
SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr...    25   7.2  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   9.5  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   9.5  
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    25   9.5  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  142 bits (345), Expect = 2e-35
 Identities = 61/115 (53%), Positives = 85/115 (73%)
 Frame = +3

Query: 57  RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 236
           +P  ++ G N V  L+E KKA+LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG
Sbjct: 128 KPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLG 187

Query: 237 ALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKS 401
            ++H+KT   LA+T V   D+   + +V A+  NF+ +Y+E R+ WGGG++G K+
Sbjct: 188 TVIHQKTAAVLAVTEVREEDKNELASIVSAVDANFSAKYDESRRKWGGGIMGGKT 242


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 54.0 bits (124), Expect = 1e-08
 Identities = 23/56 (41%), Positives = 34/56 (60%)
 Frame = +3

Query: 69  IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 236
           +R G N  TK + +  ++ +V+A D +PIE++L LP LC    VPY  V  K+ LG
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 54.0 bits (124), Expect = 1e-08
 Identities = 33/100 (33%), Positives = 47/100 (47%)
 Frame = +3

Query: 69  IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 248
           I  G   V K V K +  LV++A D+ P++++  +P LC    VPY     K  LG   +
Sbjct: 54  ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASN 113

Query: 249 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRK 368
            K  T   +  V  G +   SKV E     + E YEE+ K
Sbjct: 114 TKRPTSCVMI-VPGGKKKDMSKVEE-----YKESYEEIIK 147


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 90   LCLCRIGWC 64
            LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -3

Query: 294 HQTPHLLELSMCMSCGVQVHRGGTCP*QCSMV-HPFYGIT 178
           H   HL  +S C+    ++H G   P    +  HP YG T
Sbjct: 803 HMPVHLGSMSTCVRTQAKIHEGKLKPGDVLVTNHPSYGGT 842


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 72  RSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKM 194
           +SG+  +T+ +      +V I + +D +E    LP LC K+
Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKV 418


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 203 ILHCQGQVPPRCTCTPQDMHMLSSNKC 283
           +LHC  +   RC C P+++ + S++ C
Sbjct: 333 LLHCPRK--GRCFCKPEEIDLSSNSSC 357


>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = -2

Query: 493 FFLNLKLYSAQPCFCANSRALAFSS----LAMRALDLLPRTPPPQCLR 362
           FF  +K+++ QP FC+             L  +   +LP  P P CL+
Sbjct: 93  FFEIMKIFNLQPRFCSFYDPAFLKDDVEFLENKGFCVLPDPPTPSCLK 140


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 173 ASVMP*NGCTILHCQGQVPPRCTCT 247
           A+V+  N   + HC   +PP   CT
Sbjct: 453 AAVLNLNSLKLWHCNEAIPPTLLCT 477


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = -2

Query: 379 PPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLT 212
           P Q + SSS  S   V + S++      S DST + +    +   T  P    P+T
Sbjct: 264 PTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPIT 319


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 71  PIRHKHSHQAGREEEGAACGHR 136
           P  HKH++    +EE  +C HR
Sbjct: 151 PNGHKHTYAEMTDEERNSCSHR 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,654,590
Number of Sequences: 5004
Number of extensions: 26327
Number of successful extensions: 81
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)