Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4768
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    28   1.4  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    27   2.4  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    27   4.1  

>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
 Frame = -3

Query: 757 QQVNATSD----LFPDN*GGHSFYPFLILMLSC 671
           QQ+N T+D    LF  N   H FY +LI+ +SC
Sbjct: 596 QQLNGTNDTSDLLFHSNVSLHLFYHYLIVKVSC 628


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
 Frame = -3

Query: 301 PTIALNIFLLRTLVYSFIYRILRFFWIHDFFKLGL*RVLNGRLQFSSARGIGDVP----W 134
           P I  + F+L ++   F + ++ F WI+  +K  L ++L+ R+ F  ARG+ +      W
Sbjct: 241 PKIRFSRFILLSVTVVFTFSLILFPWIYMDYKTLLPQILH-RV-FPFARGLWEDKVANFW 298

Query: 133 TTVTTHYQV 107
            T+ T +++
Sbjct: 299 CTLNTVFKI 307


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 518  KGL*DPIESKFTMFIKIEKINLNQFIKLCLFILIITFYN 402
            K L +PI     + +KIE+I++N F  + L +L   F N
Sbjct: 1435 KNLKNPILLNLPISVKIEEISINYFKSVHLNLLTAVFCN 1473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,862,199
Number of Sequences: 5004
Number of extensions: 55367
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)