Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4766
         (447 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AC006827-2|AAF60883.1|   88|Caenorhabditis elegans Hypothetical ...    27   8.2  

>U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical
           protein C56E6.6 protein.
          Length = 1102

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 135 NSTWTNYLIFVYIKYTKLLVLINSAFNYCRKII 37
           + T  N L F+Y+   +L ++ N AFN+ R ++
Sbjct: 46  DETQLNNLQFLYLDNNQLRIIPNLAFNHLRLVV 78


>AC006827-2|AAF60883.1|   88|Caenorhabditis elegans Hypothetical
           protein Y81B9A.3 protein.
          Length = 88

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 68  LIKTNNFVYFIYTKIK*FVHVE 133
           LI  NNFVY++Y  ++ F+  +
Sbjct: 59  LITNNNFVYYLYFGVRVFIEAQ 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,113,378
Number of Sequences: 27780
Number of extensions: 167301
Number of successful extensions: 324
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)