Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4763
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    26   0.23 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    25   0.40 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   0.93 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   6.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.6  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 20  RKSLNNLEKSQRILIQFKHYRKS*ISFPKQERHSCVLSS 136
           RKS NNL  S +++ ++KH       F   ER    + S
Sbjct: 27  RKSANNLAHSMKVIYEWKHID---FDFGSDERRDAAIKS 62


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 268 KQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSD 387
           K K  + +L+    K  A H+EQ+ R +  +RR  EQ+++
Sbjct: 92  KAKRFIKSLEERERKH-AVHKEQLSREQRFLRRRLEQLTN 130


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 516 RENKSRRVYLKQYKFYILLCFVGIF 442
           R +  R  Y+K    Y+++CFV +F
Sbjct: 292 RSSLPRISYVKAIDIYLVMCFVFVF 316


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
          protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 11 ILDRKSLNNLEKSQRILIQFKH 76
          I  RKS  NLE S  ++ ++K+
Sbjct: 22 IHQRKSSKNLEHSMNVIHEWKY 43


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 301  HLNKEIAFHQEQIKRHEDAI 360
            ++NK    H+ Q+K  +D I
Sbjct: 1682 NVNKHCTIHRTQVKETDDKI 1701


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,027
Number of Sequences: 438
Number of extensions: 2297
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)