Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4762
         (837 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1208 + 25306367-25306567,25306709-25306931,25307930-253081...    30   2.0  
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377...    30   2.6  
02_01_0352 - 2542088-2542985,2543523-2543563,2543798-2543950           29   3.5  
04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220...    29   6.1  
03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526...    29   6.1  
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011...    28   8.0  

>08_02_1208 +
           25306367-25306567,25306709-25306931,25307930-25308175,
           25308636-25308686,25308804-25309064,25309159-25309211,
           25309292-25309661,25310068-25310882
          Length = 739

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 686 IIYFSLFHLNINSVVLKCLWN*NYSLYHDFVVFFLNL 576
           +I+  LF  N+ +VV+  +W  N +L   F VFF ++
Sbjct: 472 VIFVMLFTTNLMTVVMLIIWESNIALASLFFVFFFSI 508


>02_05_1331 +
           35736543-35736638,35737407-35737525,35737670-35737715,
           35738117-35738172,35738452-35738547,35738844-35738961,
           35739406-35739672,35740023-35740124,35740302-35740659,
           35740750-35740863,35741045-35741676,35741895-35742103,
           35742597-35742819,35743419-35743538,35743888-35743914,
           35744281-35745045,35745431-35748511
          Length = 2142

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = -2

Query: 719 TANFYCSQHMDIIYFSLFHLNINSVVLKCLWN*NYSLYHDFVVFFLNL 576
           T N + SQHM+I+Y  L   N  S+ L CL        H  V F+LN+
Sbjct: 283 TFNTHFSQHMEILYKYLKDKNHRSMALDCL--------HRLVKFYLNV 322


>02_01_0352 - 2542088-2542985,2543523-2543563,2543798-2543950
          Length = 363

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 238 LHVQIPSSSKRDSGQLPLCKN*NYPNLHRMTRRPFRFKYIS 116
           LH Q  S   R+S Q    +N +   +H +T+R  RFK+ S
Sbjct: 281 LHSQFTSYGDRNSEQCRYRRNYSCHKIHHLTKRTERFKWYS 321


>04_03_0153 + 11919769-11919880,11920190-11920488,11921909-11922024,
            11922113-11922248,11922959-11923006,11924130-11924228,
            11924317-11924385,11924465-11924599,11924687-11924755,
            11925221-11925276,11925465-11925624,11926534-11926698,
            11927484-11927568,11927646-11927849,11928396-11928487,
            11928571-11928613,11930727-11930884,11931520-11931630,
            11931947-11932012,11933716-11933784,11934181-11934255,
            11934330-11934506,11934598-11934683,11936259-11936313,
            11936901-11936939,11938105-11938230,11938319-11938432,
            11939208-11939265,11939485-11939623,11939698-11939783,
            11939842-11940041
          Length = 1148

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 472  YIQVALFWQFLLTLPEFNKSRKLLIHRFSP 561
            YI V   W  +LTLPE + ++ L IH F P
Sbjct: 1012 YITVCSCW--ILTLPEKDDAKALTIHTFDP 1039


>03_02_0048 -
           5265595-5265783,5265882-5265992,5266259-5266547,
           5266647-5266903,5266995-5267356,5267447-5267522,
           5267618-5267707,5267800-5267891,5267995-5268098,
           5268191-5268253,5268609-5268736
          Length = 586

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 317 ITRKEQASSRSGNEPKPH 264
           + +KE+  S+SG EPKPH
Sbjct: 240 LAKKEKDDSKSGKEPKPH 257


>01_06_0430 +
           29299970-29300031,29300162-29300294,29301057-29301160,
           29302201-29302372,29302488-29302628,29302707-29303055,
           29303133-29305477
          Length = 1101

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 401 ASRQLSFRAFRNTRLNVHTVDPPAYTHRIT-RKEQA 297
           A+ QL+ R   +   N    + PAYTH  T RK+QA
Sbjct: 371 AAAQLASRGNLSAEQNTGAFESPAYTHETTPRKQQA 406


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,165,484
Number of Sequences: 37544
Number of extensions: 344011
Number of successful extensions: 641
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)