Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4759
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...    28   1.8  
SPBC28E12.01c |apc13|SPBC9B6.12c|anaphase-promoting complex subu...    27   3.1  

>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 262 IKIHVANTRASSLLQRSGRAFKGASKHQLIAIDKMADILMHL 387
           +K HV N      L  +G A KG+    +++ DK  D   HL
Sbjct: 122 VKFHVENLHTMDELNMTGNALKGS--RPILSFDKTFDTAPHL 161


>SPBC28E12.01c |apc13|SPBC9B6.12c|anaphase-promoting complex subunit
           Apc13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 135

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -2

Query: 207 DDIK*RIVPKHPITLNIMYKIHLL*NIILSIGAVDRHVRCQKDIKKDDSTFFFSF 43
           DD++ R+    P+T + M   H   N+IL      RH    KD++ +D    F+F
Sbjct: 30  DDVEVRVEHLPPVTEDEMTIQHSSANLILMKNKQLRHEPAWKDLELEDLVNAFAF 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,091,966
Number of Sequences: 5004
Number of extensions: 61493
Number of successful extensions: 153
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)