Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4759
         (796 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68116-11|CAA92176.1|  317|Caenorhabditis elegans Hypothetical p...    29   5.1  
Z68114-12|CAA92163.1|  317|Caenorhabditis elegans Hypothetical p...    29   5.1  
AF022974-2|AAC48038.1|  344|Caenorhabditis elegans Seven tm rece...    28   8.9  

>Z68116-11|CAA92176.1|  317|Caenorhabditis elegans Hypothetical
           protein F17A2.8 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -3

Query: 692 LIYSNFFLWHTIAKVVPTVSVMAQYKIYLGFNSRSLTISPKLTM*FVFLNRKK 534
           L+Y   F+  TI+ +  T    AQ+ I++     +  I P LTM FV   RK+
Sbjct: 240 LVYVPIFICSTISLITKTEYTFAQFFIFV-LPHLTTVIDPLLTMYFVTPYRKR 291


>Z68114-12|CAA92163.1|  317|Caenorhabditis elegans Hypothetical
           protein F17A2.8 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -3

Query: 692 LIYSNFFLWHTIAKVVPTVSVMAQYKIYLGFNSRSLTISPKLTM*FVFLNRKK 534
           L+Y   F+  TI+ +  T    AQ+ I++     +  I P LTM FV   RK+
Sbjct: 240 LVYVPIFICSTISLITKTEYTFAQFFIFV-LPHLTTVIDPLLTMYFVTPYRKR 291


>AF022974-2|AAC48038.1|  344|Caenorhabditis elegans Seven tm
           receptor protein 209 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/76 (22%), Positives = 35/76 (46%)
 Frame = +1

Query: 184 YYPSFYVVIIH*NSRRI*ACTMFFIYIKIHVANTRASSLLQRSGRAFKGASKHQLIAIDK 363
           YYPSF  +I+      I   T+F+  IK + +     +L+ ++ +  +    + L+    
Sbjct: 198 YYPSFISIILTTVLVNISVITVFYFGIKCYSSLREQGALVSQNTQKLQNQLFYSLVIQTV 257

Query: 364 MADILMHLYLLTVFYF 411
           +   LMH  +  ++ F
Sbjct: 258 IPLFLMHFPVAAMYCF 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,865,996
Number of Sequences: 27780
Number of extensions: 337637
Number of successful extensions: 761
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)