Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4754
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    33   0.025
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi...    26   3.7  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    26   3.7  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   6.5  
SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   8.6  

>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 33.5 bits (73), Expect = 0.025
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -2

Query: 193 PVTEKL*NARLGWYGHMMRRNENEVGKRMLTMNVEGYRGRCRP---KKKWMDCVK 38
           P+T  L +  LG +G  +++NE  + K  + + +EG R  C     +K W+ C K
Sbjct: 306 PLTRALKSGNLGEFGKCLQKNETLLAKTKIYLTLEGTRDLCIRNLFRKTWIICGK 360


>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
           Bub3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 320

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 155 PSQTRISQLLCHRCHFQTSSNIFIPYSINSPFIHSIIQLL 274
           PSQ   S+    +CH Q   +  I Y +N    H I Q L
Sbjct: 209 PSQEAQSKNFTFKCHRQIQKDYDIVYPVNDLKFHPIHQTL 248


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 21  LLHISSFTQSIHFFLGLHLPLYPSTFIVNILLPTSFSFRL 140
           LL I SF QS +FFL      +PST +  +    S+  +L
Sbjct: 325 LLTIKSFYQSGNFFLDFLKEKFPSTILETLQQLVSWEIQL 364


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 351 CTFRLGILCSFFIINLIGF 407
           C FRLG+L S F++    F
Sbjct: 575 CCFRLGLLFSIFVVGFSSF 593


>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 122

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 356 F*VRNIMFFFYNKFNRVLLLMTRVVSDSVINIQDLTCL 469
           F +  ++ FF + FN+        V+D++IN   L C+
Sbjct: 53  FVISRMIIFFISLFNKNTYCELPAVADAIINSIALVCI 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,950
Number of Sequences: 5004
Number of extensions: 44349
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)