Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4754
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0400 - 8574836-8575121,8575473-8575549                           29   2.2  
03_05_0150 - 21283723-21284008,21284338-21284414                       29   2.9  
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848...    28   5.0  
01_06_0279 + 28119902-28120058,28120602-28120960,28121314-281213...    27   8.7  

>09_02_0400 - 8574836-8575121,8575473-8575549
          Length = 120

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -2

Query: 247 WRINRIRNEYVRRSLKVA-PVTEKL*NARLGWYGHMMRRNENEVGKRMLTMNVEGYR 80
           W + +  + + RR L++   V ++L  A LG   H   RNE E+G+R+      G+R
Sbjct: 9   WPLGQQEDPHYRRHLRLGRAVVDEL--AALGAAVHTCSRNEAELGERLREWEGRGFR 63


>03_05_0150 - 21283723-21284008,21284338-21284414
          Length = 120

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -2

Query: 247 WRINRIRNEYVRRSLKVA-PVTEKL*NARLGWYGHMMRRNENEVGKRMLTMNVEGYR 80
           W + +  + + RR L++   V ++L  A LG   H   RNE E+G+R+      G+R
Sbjct: 9   WPLGQQEDPHYRRHLQLGRAVVDEL--AALGAAVHTCSRNEAELGERLREWEGRGFR 63


>07_03_0435 +
           18182657-18183509,18184477-18184574,18184663-18184833,
           18185524-18185624,18185702-18185837,18186007-18186057,
           18186202-18186489,18186610-18186844,18186924-18187204,
           18187336-18187557
          Length = 811

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
 Frame = +3

Query: 12  LTPLLHISSFTQSIHFFLGLHLPLYP-STFIV---NILLPTSFSFRLIICP--YHPKRAF 173
           ++ +L +S  T  +H F G  LPL   S+F+     +++  S  FR +      H  R  
Sbjct: 324 ISTILLVSGLTTILHTFFGSRLPLIQGSSFVYLAPALVISNSEEFRNLSENKFKHIMREL 383

Query: 174 HNFSVTGATFRLLLTYSFRILLIL 245
               + G+ F+++L YS  + L L
Sbjct: 384 QGAILVGSVFQIILGYSGLMSLFL 407


>01_06_0279 +
           28119902-28120058,28120602-28120960,28121314-28121393,
           28121476-28121527,28121621-28121662,28121750-28121828,
           28121991-28122022,28122102-28122170,28122412-28122528,
           28122617-28122667,28123175-28123318
          Length = 393

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 117 PTSFSFRLIICPYHPKRAFHNFSVTGAT 200
           P+S    L   PYHPK A  +F+VT  T
Sbjct: 21  PSSAPLLLRAKPYHPKAAACSFTVTATT 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,285,835
Number of Sequences: 37544
Number of extensions: 228742
Number of successful extensions: 352
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)