Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4750
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.2  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   5.2  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.1  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 284 IFKHLLSSFIILNMCYGEYHTKRNILYRFDHSS 382
           + K L +  I+  +C+  +HT+R +LY +   S
Sbjct: 268 VIKMLSAVVILFFICWAPFHTQR-LLYVYAQES 299


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/40 (27%), Positives = 14/40 (35%)
 Frame = -2

Query: 446 WAPVITSHQAGRELVDTSHHILTNDQNDKEYYASCGIRHN 327
           W+  I       E V   H IL    N   +  SC   H+
Sbjct: 391 WSSFINPWTKKLEFVVGQHRILKGPANPDIFRVSCATEHS 430


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/40 (27%), Positives = 14/40 (35%)
 Frame = -2

Query: 446 WAPVITSHQAGRELVDTSHHILTNDQNDKEYYASCGIRHN 327
           W+  I       E V   H IL    N   +  SC   H+
Sbjct: 97  WSSFINPWTKKLEFVVGQHRILKGPANPDIFRVSCATEHS 136


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 441 SP*TSTLMHPPILRHG 488
           SP T+ L + P+L HG
Sbjct: 262 SPVTNNLYYSPLLSHG 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,041
Number of Sequences: 438
Number of extensions: 4419
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)