Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4748
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    41   1e-04
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.52 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   3.7  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    26   3.7  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    26   3.7  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   4.9  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    25   4.9  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    25   6.5  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   6.5  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   8.5  
SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||...    25   8.5  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   8.5  

>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 18/37 (48%), Positives = 29/37 (78%)
 Frame = +1

Query: 211 DQIGKAQKYCKWASSALNYDDVKTAIYNLKSALELLQ 321
           + I  A+ + ++A SAL+Y+D  TAI++LKSAL+LL+
Sbjct: 231 EAIQSARSHARYAYSALDYEDTTTAIHHLKSALKLLE 267


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 7   PPIAPTSFNSSLPDPNAVLRAASQLPPVPYTPDPNPGGFVP 129
           PP AP       P P + LR  +  PP P  P P+P    P
Sbjct: 124 PPSAPAP-----PTPQSELRPPTSAPPRPSIPPPSPASAPP 159


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 137 GSYGTKPPGFGSGVYGTGG 81
           G +G  P GFG G+ G GG
Sbjct: 238 GGFGGGPGGFGGGLGGFGG 256


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 7   PPIAPTSFNSSLPDPNAVLRAASQLPPVPYTPDPNPGGFVP 129
           PP  P+  N   P P     + S LPP P  P  N  G +P
Sbjct: 313 PPPPPSRRNRGKP-PIGNGSSNSSLPPPPPPPRSNAAGSIP 352


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 199 LANW*CHYERWLAEVVEVVGLG 134
           L NW   +ERW   +V++V  G
Sbjct: 478 LTNWTMEFERWAPSIVKIVYKG 499


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 31  NSSLPDPNAVLRAASQLPPVPYTPDPNPGGFVPY 132
           ++S P PN+   A++  P VP+ P P   G   Y
Sbjct: 189 SASQPLPNSTNFASTTFPSVPFHPLPVDSGLQKY 222


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +3

Query: 372 HRSGYNKKLFNLIVHD-FKKQ 431
           HR+GYN + +NL+  D F K+
Sbjct: 229 HRTGYNGRKYNLVFSDEFNKE 249


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 172 RWLAEVVEVVGLGHMAQNHQDLDLECTEQGVIEMQLL 62
           RW      +  L H+ + H+D+D E  +  V+ + +L
Sbjct: 276 RWKLWRSRLANLRHVVKKHRDIDSEVLDDFVVLLDIL 312


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 133 HMAQNHQDLDLECTEQGVIEMQ 68
           H+ Q   DLD+  TEQG+ +++
Sbjct: 432 HVDQTEHDLDILVTEQGLADLR 453


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 396 TFYYNLTDVADAFIIHGISGWITSSL 319
           TF+ N  D  D   + GI  W T+SL
Sbjct: 523 TFFTNNDDFKDKVFLAGIKRWPTTSL 548


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 86  LFRTLQIQILVVLCHMTQPNNLN 154
           L R L  ++L  LC+  +PN +N
Sbjct: 282 LVRKLAAELLTFLCYSEKPNGIN 304


>SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 178 YERWLAEVVEVVGLGHMAQNHQDLDLECTEQGVI 77
           +ER +A++ E  G+  +AQ  QDL +   EQG +
Sbjct: 212 HERAVAKIAE--GIIELAQMFQDLQVLVIEQGAL 243


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 43  PDPNAVLRAASQLPPVPYTPDPNPGGF 123
           P P+  L   S LPP    P P P GF
Sbjct: 361 PSPSH-LSIPSTLPPADGVPKPTPDGF 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,435
Number of Sequences: 5004
Number of extensions: 37016
Number of successful extensions: 124
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)