Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4748
(504 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0991 - 13034540-13034830,13035057-13035202,13035203-130353... 31 0.53
09_06_0083 + 20753191-20754480 30 0.92
04_03_0904 + 20717005-20718087 30 0.92
02_05_0157 - 26353971-26354336,26354645-26354726,26354838-263549... 29 1.6
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 29 2.1
10_06_0145 + 11215895-11216860 29 2.1
03_06_0339 + 33246043-33247350 29 2.1
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090... 28 3.7
05_05_0202 - 23211342-23211385,23211493-23211579,23211666-232117... 28 3.7
09_06_0184 - 21413275-21414267 28 4.9
02_02_0100 - 6783821-6784339,6784815-6784984,6785062-6785164,678... 28 4.9
11_06_0610 - 25449085-25453284 27 6.5
10_08_0255 - 16243951-16244098,16244612-16244817,16245588-162465... 27 6.5
05_06_0110 + 25632514-25632834,25633200-25634039 27 6.5
02_05_0968 + 33156585-33156941,33158510-33159902,33160035-331601... 27 6.5
02_05_0149 + 26290236-26290880 27 6.5
08_01_1084 - 11120719-11120950,11121035-11121133,11122446-111228... 27 8.6
06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909 27 8.6
02_04_0307 - 21905897-21906490,21906581-21906722,21907116-219072... 27 8.6
02_04_0029 + 19036176-19036481,19036602-19036733,19036814-190369... 27 8.6
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350... 27 8.6
>03_02_0991 -
13034540-13034830,13035057-13035202,13035203-13035305,
13037980-13038115,13038221-13038439,13038574-13038949,
13040854-13041027,13041065-13041101
Length = 493
Score = 31.1 bits (67), Expect = 0.53
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 363 HLRHRSGYNKKLFNLIVHDFKKQFNLMSHSDIQK**RNIEV 485
H+RHR+ YN+K+F L+ + ++ H+ + IEV
Sbjct: 303 HIRHRNAYNRKVFQLLSGYYLQEAEWFHHNYVPSFKEQIEV 343
>09_06_0083 + 20753191-20754480
Length = 429
Score = 30.3 bits (65), Expect = 0.92
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 4 TPPIAPTSFNSSLPDPNAVLRAASQLPPVPY--TPDPNPGG 120
+PP APT+F P P + A S PP+P+ TP PGG
Sbjct: 281 SPPPAPTAFVPHTPLPPVDVPALS--PPLPHGKTPSGAPGG 319
>04_03_0904 + 20717005-20718087
Length = 360
Score = 30.3 bits (65), Expect = 0.92
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +1
Query: 4 TP-PIAPTSFNSSLPDPNAVLRAASQLPPVPYTPDPNPGGFVP 129
TP P PT P P + + P PYTP P P + P
Sbjct: 138 TPTPTPPTYKPQPKPTPPPTYKPQPKPTPTPYTPTPTPPSYKP 180
Score = 23.0 bits (47), Expect(2) = 7.6
Identities = 10/31 (32%), Positives = 13/31 (41%)
Frame = +1
Query: 10 PIAPTSFNSSLPDPNAVLRAASQLPPVPYTP 102
P PT P+P + + P PYTP
Sbjct: 244 PAPPTYKPQPKPNPPPTYKPQPKPTPTPYTP 274
Score = 22.6 bits (46), Expect(2) = 7.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +1
Query: 85 PVPYTPDPNP 114
P PYTP P P
Sbjct: 287 PTPYTPTPKP 296
>02_05_0157 -
26353971-26354336,26354645-26354726,26354838-26354933,
26355365-26356068
Length = 415
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = -2
Query: 140 VGSYGTKPPGFGSGVYGTGGN*DAALNTAFGSGNELLKLVGAMGGV 3
VG+ G G G GV G GG A G+G ++ GA GGV
Sbjct: 127 VGAGGGVAGGDGGGVVGAGGGVVGAGGGVVGAGGGVVGAGGAGGGV 172
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 4 TPPIAPTSFNSSLPDPNAVLRAASQLPPVP 93
TPP ++ +SSLP P +L Q PP P
Sbjct: 85 TPPPPSSTASSSLPPPTPLLPKHQQAPPPP 114
>10_06_0145 + 11215895-11216860
Length = 321
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 4 TPPIAPTSFNSSLPDPNAVLRAASQLPPVPYTPDPNP 114
T A S S P P + +AA+ PP P P P P
Sbjct: 249 TADAADVSSTGSSPSPTSSNQAATATPPAPRPPPPLP 285
>03_06_0339 + 33246043-33247350
Length = 435
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 34 SSLPDPNAVLRAASQLPPVPYTPDPNPGG 120
++LP P A R AS PP P PD GG
Sbjct: 15 AALPPPAAARRHASPPPPQPQHPDKAGGG 43
>09_06_0107 +
20907560-20908491,20908511-20908625,20908967-20909058,
20909293-20909556,20910714-20911494
Length = 727
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 7 PPIAPTSFNSSLPDPNAVLRAASQLPPVPYTPDPNPGGF 123
PP++PT +S ++ + A+ LPP P P P+ F
Sbjct: 94 PPLSPTPTTTSWTTNSSSISASPILPPPPPPPMPSSWDF 132
>05_05_0202 -
23211342-23211385,23211493-23211579,23211666-23211779,
23211886-23212111,23212222-23212401,23212511-23212654,
23212818-23212979,23213093-23213296,23214109-23214156,
23214601-23214846
Length = 484
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 34 SSLPDPNAVLRAASQLPPVPYTPDPNPG 117
++ P P AA ++PP YTP P G
Sbjct: 30 AAAPAPENAFAAAPKMPPFDYTPPPYDG 57
>09_06_0184 - 21413275-21414267
Length = 330
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 10 PIAPTSFNSSLPDPNAVLRAASQLPPVPYTPDPN 111
P PTS S+ P P +S PP P P+
Sbjct: 82 PALPTSMESTFPSPRPPSTPSSSTPPSSPVPPPS 115
>02_02_0100 -
6783821-6784339,6784815-6784984,6785062-6785164,
6785291-6785454,6786781-6786821,6786933-6787129
Length = 397
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 137 GSYGTKPPGFGSGVYGTGGN*DAALNTAFGSG 42
G Y + G+G G YG GGN A + +G G
Sbjct: 295 GYYDSTAYGYGRGGYGYGGN--AGFGSGYGGG 324
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +1
Query: 7 PPIAPTSFNSSLPDPNAVLRAASQLPPVPYTPDPNPGGFVP 129
PP AP S P + + +PP +T P P + P
Sbjct: 728 PPPAPEGHTPSPPKSSPPEEKSPPIPPTSHTSPPTPEEYTP 768
>10_08_0255 -
16243951-16244098,16244612-16244817,16245588-16246500,
16246577-16246713
Length = 467
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +1
Query: 7 PPIAPTSFNSSLPDPNAVL 63
PP+A S NSSLPDP AV+
Sbjct: 24 PPLA-ASLNSSLPDPAAVV 41
>05_06_0110 + 25632514-25632834,25633200-25634039
Length = 386
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 137 GSYGTKPPGFGSGVYGTGGN*DAALNTAFGS 45
G+YG G G+GV G GG+ AA N + S
Sbjct: 49 GAYGGGGAGLGAGVVGGGGDDRAAGNASADS 79
>02_05_0968 +
33156585-33156941,33158510-33159902,33160035-33160118,
33160216-33160265
Length = 627
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 4 TPPIAPTSFNSSLPDPNAVLRAASQLPPVPYTPD-PNPGG 120
T + T+ SSLPD A RA SQ PP P T + P G
Sbjct: 148 TRSFSSTATKSSLPDAGA-RRALSQEPPPPPTSERPTTAG 186
>02_05_0149 + 26290236-26290880
Length = 214
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -2
Query: 137 GSYGTKPPGFGSGVYGTGGN*DAALNTAFGSG 42
G YG P GFG G G GG N GSG
Sbjct: 121 GGYGGHPGGFGGG--GGGGGGGGGRNYGGGSG 150
>08_01_1084 -
11120719-11120950,11121035-11121133,11122446-11122849,
11123559-11124197
Length = 457
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +1
Query: 1 ETPPIAPTSFNSSLPDPNAVLRAASQLPPVPYTPDPNPGGF 123
E+PP AP S S +A+L AAS P P P GF
Sbjct: 93 ESPPEAPCSTRLSSSLASAILAAASASPAAP--PPVRDDGF 131
>06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909
Length = 627
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +1
Query: 7 PPIAPTSFNSSLP-DPNAVLRAASQLPPVPYTPDPNPGGFVP 129
PP+ T+F SLP VL + P + P+P P P
Sbjct: 429 PPVGQTAFPGSLPVQTPTVLPQTAATPAITNDPNPPPYPLFP 470
>02_04_0307 -
21905897-21906490,21906581-21906722,21907116-21907247,
21907303-21907433,21908028-21908185,21908299-21908396,
21908511-21908631,21908748-21908965,21909230-21909429
Length = 597
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 7 PPIAPTSFNSSLPDPNAVLRAASQLPPVP 93
PP++PT+ +++ P + + A + PP+P
Sbjct: 18 PPLSPTAVDAAAPLADTDVAVARRFPPLP 46
>02_04_0029 +
19036176-19036481,19036602-19036733,19036814-19036933,
19037763-19037837,19038282-19038392,19038528-19038635,
19038865-19038933,19038934-19039004,19039095-19039147,
19039223-19039326,19039424-19039696
Length = 473
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 7 PPIAPTSFNSSLPDPNAVLRAASQLPPVPYTPDPNP 114
P + +S ++S+P P + AA+ +PP P + P
Sbjct: 18 PHASSSSTDASIPAPTSAAAAAADVPPPPSSSSSPP 53
>01_07_0021 -
40533864-40534583,40534779-40534814,40534909-40535048,
40535837-40535922,40536430-40536653,40536770-40536865,
40538766-40538833,40539945-40540055,40540799-40540955
Length = 545
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 7 PPIAPTSFNSSLPDPNAVLRAASQLPPVPYTPDPNP 114
PP+ +F P P S PP P T DP P
Sbjct: 420 PPLPSDAFEQPPPPPEHPPPPESTSPPPPPTSDPPP 455
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,578,269
Number of Sequences: 37544
Number of extensions: 268668
Number of successful extensions: 1100
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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